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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF4154 and GFF4155 are separated by 65 nucleotides
GFF4155 and GFF4156 overlap by 4 nucleotides
GFF4156 and GFF4157 are separated by 4 nucleotides
GFF4157 and GFF4158 overlap by 44 nucleotides
GFF4154 - hypothetical protein, at 4,180,273 to 4,180,932
GFF4154
GFF4155 - Rhodanese domain protein UPF0176, cyanobacterial/alphaproteobacterial subgroup, at 4,180,998 to 4,181,819
GFF4155
GFF4156 - hypothetical protein, at 4,181,816 to 4,182,076
GFF4156
GFF4157 - Zinc metalloprotease, at 4,182,081 to 4,182,815
GFF4157
GFF4158 - UPF0260 protein YcgN, at 4,182,772 to 4,183,197
GFF4158
Group
Condition
GFF4154
GFF4155
GFF4156
GFF4157
GFF4158
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
-0.2
-0.3
-0.2
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
-0.1
-0.4
-0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.0
-0.6
-0.1
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.2
-0.0
-0.3
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.3
-0.3
-0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.0
-0.3
-0.2
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
-0.1
-0.3
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.3
-0.2
+0.1
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.2
+0.0
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
+0.0
-0.2
-0.1
-0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.1
-0.2
-0.0
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
-0.0
-0.3
-0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
+0.0
-0.2
-0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
+0.0
+0.3
-0.2
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
-0.1
-0.0
-0.2
-0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.0
+0.1
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.0
+0.1
-0.0
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.1
+0.2
+0.0
-0.1
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