Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21255	PS417_21260	PS417_21265	PS417_21270	PS417_21275
carbon source	L-Valine (C)	+0.8	-0.3	N.D.	-0.5	-4.8
carbon source	L-Valine (C)	-0.1	+0.2	N.D.	-0.2	-4.4
carbon source	L-Isoleucine (C)	-0.8	-0.0	N.D.	-0.2	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.4	+0.2	N.D.	-4.0	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.1	N.D.	-2.5	+0.1
phage	JP1 MOI 10	-2.8	+0.2	N.D.	+0.5	-0.3
nophagecontrol	Only library	-1.7	+0.0	N.D.	-0.3	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.2	-0.1	N.D.	-1.5	-0.7
phage	JP1 MOI 1	-1.4	-0.1	N.D.	-0.3	-0.5
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.3	N.D.	-1.5	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.2	N.D.	-1.1	-1.2
solid stress	Fraxetin 3 mM; solid stress	+0.2	-0.1	N.D.	-0.5	-1.5
soil	soil sample 5; outgrowth in LB	-1.1	+0.2	N.D.	-1.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.0	N.D.	-1.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	-0.0	N.D.	-1.8	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	+0.3	N.D.	-0.7	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.1	-0.1	N.D.	-0.9	+0.4
seeds	Growth on radish seeds for 72 hours	-0.2	+0.5	N.D.	+1.4	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-1.2	+0.5	N.D.	+2.4	-0.3
stress	R2A with Fusaric 120 ug/mL	+0.3	-0.2	N.D.	+2.1	-0.7
stress	R2A with Fusaric 120 ug/mL	+0.1	+0.1	N.D.	+1.9	-0.6
stress	R2A with Fusaric 120 ug/mL	-0.1	+0.1	N.D.	+2.3	-0.7
stress	R2A with Fusaric 120 ug/mL	+0.1	-0.0	N.D.	+2.4	-0.7
stress	R2A with Fusaric 120 ug/mL	+0.3	+0.1	N.D.	+2.2	-0.6
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.3	+0.0	N.D.	-0.3	+2.5
stress	R2A with Fusaric 120 ug/mL	+0.5	+0.2	N.D.	+2.1	-0.5
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.6	+0.1	N.D.	+0.6	+1.3
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	+0.2	+0.0	N.D.	-0.3	+3.0
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	-0.2	+0.3	N.D.	+0.1	+3.0
soil	soil sample 4; outgrowth in LB	+0.3	-0.0	N.D.	+0.0	+3.1