Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21205	PS417_21210	PS417_21215	PS417_21220	PS417_21230
soil	soil sample 3; outgrowth in LB	-0.1	-2.1	-0.4	-0.1	-0.5
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.1	-2.4	+0.2	-0.3	-0.2
phage	P. simiae OR Antrim MOI 1	+0.4	-1.9	-0.2	-0.6	-0.3
carbon source	Putrescine (C)	+0.1	-2.3	+0.1	-0.1	-0.1
carbon source	L-Arginine (C)	-0.0	-2.1	+0.1	+0.0	-0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.1	-2.0	-0.1	-0.2	+0.1
phage	P. simiae ORA MOI 0.1	+0.1	-0.1	-0.3	-1.6	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.2	-2.5	-0.1	+0.2	+0.2
soil	soil sample 5; outgrowth in LB	+0.2	-1.1	-0.9	-0.2	+0.1
carbon source	Putrescine (C)	+0.0	-1.9	+0.1	+0.1	-0.2
soil	soil sample 2; outgrowth in LB	+0.1	-2.4	+0.5	+0.2	-0.2
supernatant	LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-0.0	-2.1	+0.2	-0.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.1	-1.7	+0.0	-0.3	+0.1
carbon source	Gly-Glu (C)	+0.1	-2.1	+0.1	+0.3	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.1	-1.0	+0.1	+0.5	-0.6
soil	soil sample 8; outgrowth in LB	+0.0	-2.0	+0.5	+0.5	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-1.6	+0.2	+0.4	+0.2
nophagecontrol	Only library	+0.2	+0.7	-0.3	-0.9	-0.4
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.0	-1.1	-0.4	+0.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.2	-1.8	+0.5	+0.7	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.9	+0.2	-0.1	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.3	-1.3	-0.1	+0.7	+0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+0.1	+0.4	+0.9	-0.8
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.9	+0.3	+0.7	+0.2
seeds	Growth on radish seeds for 72 hours	+0.7	-0.9	+0.1	+0.7	+0.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	-0.7	-0.2	+1.3	+0.3
root	root sample 6; outgrowth in LB	+0.6	-0.6	+0.0	+0.8	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.3	+1.1	-0.3	+1.1	+0.0
stress	Gentamicin 0.008 mg/ml	-0.1	+2.4	+0.0	-0.2	+0.2
seeds	Growth on radish seeds for 72 hours	+0.1	+1.3	+0.6	+0.4	-0.1