Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_21180 and PS417_21185 are separated by 296 nucleotidesPS417_21185 and PS417_21190 are separated by 296 nucleotidesPS417_21190 and PS417_21195 are separated by 336 nucleotidesPS417_21195 and PS417_21200 are separated by 212 nucleotides PS417_21180: PS417_21180 - short-chain dehydrogenase, at 4,607,000 to 4,607,269 _21180 PS417_21185: PS417_21185 - hypothetical protein, at 4,607,566 to 4,608,660 _21185 PS417_21190: PS417_21190 - tRNA-Ser, at 4,608,957 to 4,609,046 _21190 PS417_21195: PS417_21195 - enoyl-CoA hydratase, at 4,609,383 to 4,610,075 _21195 PS417_21200: PS417_21200 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 4,610,288 to 4,611,016 _21200
Group Condition PS417_21180 PS417_21185 PS417_21190 PS417_21195 PS417_21200
stress Doxycycline hyclate 0.001 mg/ml -0.1 -0.3 N.D. -0.6 -0.6
liquid stress Scopoletin 3 mM; liquid stress +0.5 -0.9 N.D. -0.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -1.1 -0.5 N.D. +0.2 +0.2
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X -0.8 -0.7 N.D. +0.1 +0.3
phage JP1 MOI 10 -0.7 +0.3 N.D. -0.8 +0.3
stress methylglyoxal 0.032 vol% -0.5 -0.3 N.D. +0.5 -0.4
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 +0.4 N.D. -0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 -0.1 N.D. -1.1 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.5 -0.7 N.D. +0.1 -0.2
phage JP1 MOI 1 -0.5 +0.6 N.D. -0.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.8 -0.1 N.D. +0.3 +0.3
phage P. simiae OR Antrim MOI 10 -0.4 -0.5 N.D. +0.6 +0.0
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant -0.6 -0.3 N.D. +0.5 +0.4
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 -0.4 N.D. -0.6 +0.0
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) +0.7 -0.8 N.D. +0.1 +0.1
seeds Growth on radish seeds for 72 hours +1.0 -1.2 N.D. +0.2 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.9 -1.0 N.D. +0.4 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.9 -0.5 N.D. -0.0 -0.1
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 +1.1 N.D. -0.3 +0.1
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.6 +0.8 N.D. -0.0 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 +0.0 N.D. -0.5 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.5 +0.4 N.D. +0.6 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.9 N.D. -0.0 +0.3
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.3 +0.6 N.D. +0.3 +0.4
solid stress Fraxetin 3 mM; solid stress +0.5 +0.7 N.D. -0.3 +0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.5 +0.9 N.D. -0.2 +0.0
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.2 +1.6 N.D. -0.4 +0.3
seeds Growth on radish seeds for 24 hours +1.4 +0.1 N.D. +0.2 +0.1
phage JP1 MOI 1 +0.8 +0.6 N.D. +0.3 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +1.4 +0.4 N.D. +0.3 +0.3
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PS417_21180
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PS417_21185
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PS417_21195
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PS417_21200
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