Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_21160 and PS417_21165 are separated by 93 nucleotidesPS417_21165 and PS417_21170 are separated by 54 nucleotidesPS417_21170 and PS417_21175 are separated by 119 nucleotidesPS417_21175 and PS417_21180 are separated by 389 nucleotides PS417_21160: PS417_21160 - membrane protein, at 4,603,279 to 4,604,247 _21160 PS417_21165: PS417_21165 - LysR family transcriptional regulator, at 4,604,341 to 4,605,225 _21165 PS417_21170: PS417_21170 - membrane protein, at 4,605,280 to 4,605,858 _21170 PS417_21175: PS417_21175 - hypothetical protein, at 4,605,978 to 4,606,610 _21175 PS417_21180: PS417_21180 - short-chain dehydrogenase, at 4,607,000 to 4,607,269 _21180
Group Condition PS417_21160 PS417_21165 PS417_21170 PS417_21175 PS417_21180
phage JP1 MOI 10 -0.7 -0.3 -0.5 +0.4 -0.7
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -0.2 -0.3 +0.1 -0.8
phage P. simiae ORA MOI 0.1 -0.5 -1.3 +0.1 +0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.3 +0.3 +0.1 +0.1 -1.1
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.5 -0.4 +0.5 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.2 +0.0 -0.7 +0.6 -0.5
nitrogen source nitrate (N) -0.5 -0.5 -0.1 -0.2 +0.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.8 -0.2 -0.6 -0.4 -0.1
rhizosphere rhizosphere sample 2; outgrowth in LB +0.7 -0.3 -0.0 -0.0 -0.8
carbon source 2'-Deoxyinosine 5 mM (C) +0.7 -1.0 -0.5 +0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.7 +0.1 +0.3 +0.4 -0.4
agar plate interaction Taped volatile agar plate with Trichoderma atroviridae IMI -0.5 -0.3 +0.8 -0.0 -0.3
phage P. simiae OR Antrim MOI 10 -0.7 -0.2 +0.8 -0.3 +0.1
carbon source Deoxyribonucleic from herring sperm 5 mg/mL (C) +0.1 -0.4 -0.4 -0.3 +0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 +0.4 -0.2 +0.2 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.5 -0.2 -0.0 +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.5 -0.2 +0.4 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 -0.4 +0.7 -0.2 +0.2
carbon source 2'-Deoxyinosine 5 mM (C) +0.9 -0.6 +0.3 +0.2 -0.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.5 +0.1 +0.5 -1.0
stress methylglyoxal 0.032 vol% +0.9 -0.2 +0.5 +0.2 -0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.4 +0.5 +0.3 -0.5
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 +0.7 +0.3 +0.8 -0.2
carbon source L-Valine (C) +0.4 +0.7 -0.3 +0.4 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.5 +0.5 +0.2 -0.2 +0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.5 +0.8 +0.3 +0.0 +0.3
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.1 -0.0 +0.7 +0.5 +0.6
seeds Growth on radish seeds for 72 hours +0.8 +0.2 +0.1 -0.0 +1.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.3 +1.8 -0.2 +0.1 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.4 +0.7 +0.0 +1.4
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PS417_21160
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PS417_21165
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PS417_21175
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PS417_21180
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