Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21155	PS417_21160	PS417_21165	PS417_21170	PS417_21175
phage	P. simiae ORA MOI 0.1	-0.1	-0.5	-1.3	+0.1	+0.2
phage	JP1 MOI 10	+0.0	-0.7	-0.3	-0.5	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	-0.9	+0.4	-0.2	+0.2
ecofab	LB in EcoFAB_3.5mL	-0.0	+0.4	-0.3	-0.7	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	-0.2	+0.0	-0.7	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.8	-0.2	-0.6	-0.4
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	+0.7	-1.0	-0.5	+0.2
phage	P. simiae OR Antrim MOI 10	-0.1	-0.7	-0.2	+0.8	-0.3
stress	Gentamicin 0.008 mg/ml	-0.8	+0.1	+0.3	-0.2	+0.2
agar plate interaction	Taped volatile agar plate with Trichoderma atroviridae IMI	-0.4	-0.5	-0.3	+0.8	-0.0
stress	Spectinomycin 0.4 mg/ml	-0.3	+0.3	+0.5	-0.5	-0.1
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.4	+0.1	-0.5	-0.4	+0.5
agar plate interaction control	Taped volatile agar plate with no fungus	-0.4	+0.5	+0.2	-0.4	+0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-0.5	-0.5	+0.4	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.1	-0.7	+0.1	+0.3	+0.4
solid stress	Fraxetin 0.5 mM; solid stress	-0.3	+0.3	+0.4	-0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.4	-0.4	+0.7	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.3	+0.5	+0.3	-0.6	+0.1
soil	soil sample 6; outgrowth in LB	-0.3	+0.7	+0.4	-0.2	+0.1
carbon source	L-Valine (C)	-0.4	+0.4	+0.7	-0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.5	+0.5	+0.2	-0.2
carbon source	2'-Deoxyinosine 5 mM (C)	+0.1	+0.9	-0.6	+0.3	+0.2
soil	soil sample 8; outgrowth in LB	-0.1	+0.8	+0.4	+0.3	+0.0
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	-0.4	+0.7	+0.3	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.3	+0.4	+0.5	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.5	+0.8	+0.3	+0.0
stress	methylglyoxal 0.032 vol%	+0.2	+0.9	-0.2	+0.5	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.1	+0.5	+0.5	+0.1	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	+0.1	-0.0	+0.7	+0.5
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	+0.3	+0.3	+1.8	-0.2	+0.1