Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02090	PS417_02095	PS417_02100	PS417_02105	PS417_02110
phage	P. simiae OR1 MOI 0.1	N.D.	-0.3	-0.8	+0.1	-1.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	-0.0	-0.3	-0.9	-1.0
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	N.D.	-0.0	-0.1	-0.5	-1.4
phage	JP1 MOI 10	N.D.	-0.3	-0.5	+0.7	-1.4
stress	Gentamicin 0.008 mg/ml	N.D.	+0.3	-0.4	-0.9	-0.4
seeds	Growth on radish seeds for 72 hours	N.D.	+0.0	+0.4	-0.3	-1.3
soil	soil sample 4; outgrowth in LB	N.D.	+0.4	+0.3	+0.7	-2.1
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.5	-0.8	+0.7	+0.3
motility	outer cut, LB soft agar motility assay	N.D.	+0.6	-0.2	+0.4	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.1	-1.0	+0.8
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-0.4	+0.7	+0.3	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	+0.1	-1.0	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-0.1	+1.2	-0.5	-0.5
agar plate interaction control	Parafilmed volatile agar plate with no fungus	N.D.	-0.2	+0.5	+0.7	-0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.5	+0.7	+0.4	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.4	+0.5	-0.5	+0.6
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.1	+0.4	+1.0	-0.4
phage	JP1 MOI 0.1	N.D.	+0.1	-1.1	+0.9	+1.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.5	+0.8	-0.4	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.2	+0.6	+1.1	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	+0.7	+0.4	+0.7
seeds	Growth on radish seeds for 72 hours	N.D.	+0.0	+1.1	-0.3	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.2	+0.3	+0.8	+0.7
soil	soil sample 3; outgrowth in LB	N.D.	+0.5	+0.3	+0.5	+0.7
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.4	+0.9	+0.5	+0.4
seeds	Growth on radish seeds for 24 hours	N.D.	+0.7	+0.4	+0.5	+0.5
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.9	-0.0	+1.5	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.6	+0.1	+0.9	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.7	+0.2	+2.1	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-0.8	-0.0	-0.2	+9.3