Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_21115 and PS417_21120 are separated by 122 nucleotidesPS417_21120 and PS417_21125 are separated by 152 nucleotidesPS417_21125 and PS417_21130 are separated by 473 nucleotidesPS417_21130 and PS417_21135 are separated by 13 nucleotides PS417_21115: PS417_21115 - transcriptional regulator, at 4,595,507 to 4,595,863 _21115 PS417_21120: PS417_21120 - phosphoserine phosphatase, at 4,595,986 to 4,596,603 _21120 PS417_21125: PS417_21125 - phosphoadenosine phosphosulfate reductase, at 4,596,756 to 4,597,490 _21125 PS417_21130: PS417_21130 - nitrate reductase, at 4,597,964 to 4,599,493 _21130 PS417_21135: PS417_21135 - Asp/Glu/hydantoin racemase, at 4,599,507 to 4,600,223 _21135
Group Condition PS417_21115 PS417_21120 PS417_21125 PS417_21130 PS417_21135
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.0 -6.1 -0.3 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -1.5 -5.5 +0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.5 -5.9 -0.1 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -5.2 -0.2 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. -0.8 -4.3 +0.1 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.8 -5.5 +0.4 -0.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.2 -5.7 +0.1 +0.8
nitrogen source Adenine (N) N.D. -2.7 -2.2 +0.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.3 -4.5 +0.0 +0.1
stress Polymyxin B sulfate 0.006 mg/ml N.D. -0.4 -4.4 -0.0 +0.1
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.2 -3.9 -0.4 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -4.2 +0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.5 -3.8 -0.1 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.4 -3.8 -0.2 +0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.5 -4.4 +0.0 +0.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -3.7 -0.4 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.3 -4.2 +0.0 +0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.9 -4.6 -0.1 +0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.1 -3.4 -0.3 +0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.7 -3.1 +0.0 +0.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. +0.5 -3.8 +0.0 +0.1
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.4 -3.1 +0.1 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. -0.1 -3.4 +0.3 +0.2
stress R2A with Polymyxin B sulfate 0.003 mg/ml N.D. +0.9 -3.5 +0.2 -0.3
soil soil sample 7; outgrowth in LB N.D. -0.3 -3.0 +0.3 +0.3
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.9 -2.9 +0.2 +0.4
stress methylglyoxal 0.032 vol% N.D. -1.5 +3.8 +0.2 -0.7
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. +0.1 +4.0 -0.2 -0.3
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.1 +5.9 +0.1 -0.0
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X N.D. -0.2 +6.3 +0.2 -0.1
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PS417_21115
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PS417_21120
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PS417_21125		 remove
PS417_21130
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PS417_21135
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