Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21070	PS417_21075	PS417_21080	PS417_21085	PS417_21090
carbon source	L-Valine (C)	-4.0	N.D.	N.D.	-1.0	+0.0
carbon source	L-Isoleucine (C)	-3.8	N.D.	N.D.	-0.6	-0.5
soil	soil sample 2; outgrowth in LB	-4.1	N.D.	N.D.	-0.2	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.6	N.D.	N.D.	+0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.2	N.D.	N.D.	+0.1	-0.2
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-2.5	N.D.	N.D.	-0.6	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.2	N.D.	N.D.	+0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	N.D.	+0.2	-2.9
solid stress	Fraxetin 3 mM; solid stress	-0.9	N.D.	N.D.	-0.4	-1.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.8	N.D.	N.D.	-0.8	-0.2
carbon source	Gly-Glu (C)	-0.8	N.D.	N.D.	-0.2	-1.5
soil	soil sample 5; outgrowth in LB	-2.8	N.D.	N.D.	+0.2	+0.3
rhizosphere	rhizosphere sample 1; outgrowth in LB	-2.1	N.D.	N.D.	-0.5	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.7	N.D.	N.D.	-0.6	+0.4
phage	P. simiae OR1 MOI 0.1	-1.5	N.D.	N.D.	+0.4	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	N.D.	N.D.	-0.1	-2.0
seeds	Growth on radish seeds for 72 hours	-1.7	N.D.	N.D.	-1.5	+1.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-1.5	N.D.	N.D.	+0.3	-0.3
soil	soil sample 6; outgrowth in LB	-1.7	N.D.	N.D.	-0.1	+0.5
carbon source	octanoate (C)	+0.7	N.D.	N.D.	-0.3	-1.6
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.4	N.D.	N.D.	-0.5	+1.5
soil	soil sample 3; outgrowth in LB	-0.5	N.D.	N.D.	-0.8	+1.0
solid stress	Fraxetin 1 mM; solid stress	+1.0	N.D.	N.D.	-0.3	-0.8
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+1.1	N.D.	N.D.	-0.5	-0.5
soil	soil sample 4; outgrowth in LB	-0.9	N.D.	N.D.	+0.3	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.0	N.D.	N.D.	-0.7	+0.7
nitrogen source	Adenine (N)	-0.4	N.D.	N.D.	+0.7	+1.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	N.D.	N.D.	+1.3	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+1.2	N.D.	N.D.	-0.4	+1.1
stress	Gentamicin 0.008 mg/ml	+0.5	N.D.	N.D.	-0.6	+3.5