Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4107 and GFF4108 are separated by 7 nucleotidesGFF4108 and GFF4109 overlap by 4 nucleotidesGFF4109 and GFF4110 overlap by 4 nucleotidesGFF4110 and GFF4111 are separated by 95 nucleotides GFF4107 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 10,356 to 11,159 GFF4107 GFF4108 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 11,167 to 11,913 GFF4108 GFF4109 - Aspartate aminotransferase (EC 2.6.1.1), at 11,910 to 13,148 GFF4109 GFF4110 - ABC-type amino acid transport/signal transduction system, periplasmic component/domain, at 13,145 to 13,969 GFF4110 GFF4111 - ABC-type amino acid transport/signal transduction system, periplasmic component/domain, at 14,065 to 14,913 GFF4111
Group Condition GFF4107 GFF4108 GFF4109 GFF4110 GFF4111
complex community Community=guar; Passage=4 -3.3 -1.6 -0.3 N.D. +0.9
complex community Community=guar; Passage=4 -3.2 -1.0 -0.4 N.D. +0.5
vitamin M9 with calcium pantothenate 10 mg/mL -1.6 -0.5 -0.4 N.D. -0.4
complex community Community=Locust bean gum; Passage=4 -1.6 +0.1 -0.2 N.D. -1.0
vitamin M9 with Supernatant from Cyptococcus -1.2 -1.1 +0.1 N.D. -0.4
complex community Community=Kojac gum; Passage=4 -3.3 +1.2 -0.1 N.D. -0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -1.3 -0.1 -0.2 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.5 -0.8 -0.3 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -1.0 -0.3 -0.0 N.D. -0.3
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -1.3 -0.2 +0.1 N.D. -0.1
complex community Community=arabino-guar; Passage=4 -1.3 -0.0 +0.2 N.D. -0.3
complex community Community=arabino-guar; Passage=4 +0.8 -0.7 -0.8 N.D. -0.6
vitamin M9 with Supernatant from Cyptococcus +0.5 -1.3 -0.2 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.5 -0.0 -0.8 N.D. -0.7
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -1.3 +0.0 +0.1 N.D. +0.1
no phage control no phage control -1.1 +0.1 -0.2 N.D. +0.1
complex community Community=Locust bean gum; Passage=1 -1.0 +0.3 -0.1 N.D. -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.9 -0.3 -0.1 N.D. +0.2
no phage control no phage control -1.2 +0.3 -0.0 N.D. -0.1
complex community Community=Locust bean gum; Passage=4 +0.1 +0.6 -1.4 N.D. -0.3
phage phage_bap4 -0.7 -0.2 -0.5 N.D. +0.5
complex community Community=Locust bean gum; Passage=4 +1.1 +1.1 -1.9 N.D. -1.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.7 +0.6 -0.2 N.D. -0.4
phage phage_bap4 -0.9 +0.4 -0.1 N.D. +0.4
complex community Community=Locust bean gum; Passage=4 -0.8 -0.2 +0.3 N.D. +0.4
vitamin M9 with Supernatant from Cyptococcus -0.7 +0.2 +0.3 N.D. +0.2
complex community Community=arabino-guar; Passage=4 -0.4 +0.5 +0.3 N.D. -0.5
complex community Community=arabino-guar; Passage=4 +0.3 -1.1 +0.6 N.D. +0.4
complex community Community=guar; Passage=4 +0.9 -0.9 +0.0 N.D. +0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.5 +0.4 N.D. +0.5
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