Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF4103 and GFF4104 are separated by 31 nucleotidesGFF4104 and GFF4105 overlap by 4 nucleotidesGFF4105 and GFF4106 are separated by 25 nucleotidesGFF4106 and GFF4107 overlap by 14 nucleotides GFF4103 - N-methylhydantoinase A (EC 3.5.2.14), at 5,440 to 7,596 GFF4103 GFF4104 - Cystathionine beta-lyase (EC 4.4.1.8), at 7,628 to 8,842 GFF4104 GFF4105 - Cysteine dioxygenase (EC 1.13.11.20), at 8,839 to 9,480 GFF4105 GFF4106 - ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines), at 9,506 to 10,369 GFF4106 GFF4107 - ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines), at 10,356 to 11,159 GFF4107
Group Condition GFF4103 GFF4104 GFF4105 GFF4106 GFF4107
complex community Community=Locust bean gum; Passage=4 +0.1 -0.8 N.D. -3.3 -0.8
complex community Community=Locust bean gum; Passage=4 +0.0 +0.7 N.D. -3.4 -1.6
complex community Community=Kojac gum; Passage=4 -0.3 -0.5 N.D. +0.9 -3.3
vitamin M9 with calcium pantothenate 10 mg/mL -0.1 -0.5 N.D. -0.4 -1.6
complex community Community=guar; Passage=4 +0.1 +0.4 N.D. +0.2 -3.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 -0.5 N.D. -0.8 -1.3
complex community Community=arabino-guar; Passage=4 -0.2 -0.6 N.D. -2.4 +0.8
complex community Community=guar; Passage=4 -0.8 -0.6 N.D. -1.0 +0.1
complex community Community=arabino-guar; Passage=4 +0.0 -0.0 N.D. -1.0 -1.3
phage phage_bap4 -0.4 -0.2 N.D. -1.2 -0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.2 -0.5 N.D. -0.4 -1.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.4 -0.6 N.D. +0.1 -1.0
complex community Community=guar; Passage=4 -0.3 +0.4 N.D. +1.2 -3.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 -0.3 N.D. -1.3 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 -0.5 N.D. -1.3 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.0 -0.5 N.D. -0.5 -0.5
vitamin M9 with calcium pantothenate 10 mg/mL -0.2 -0.3 N.D. -0.6 -0.4
no phage control no phage control -0.1 -0.4 N.D. +0.3 -1.1
no phage control no phage control -0.2 -0.0 N.D. +0.1 -1.2
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.2 N.D. +0.7 -1.2
phage phage_bap4 -0.3 -0.4 N.D. -0.6 +0.3
phage phage_bap4 -0.1 -0.4 N.D. +0.3 -0.6
complex community Community=Kojac gum; Passage=1 -0.4 +0.5 N.D. -0.8 -0.1
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.4 N.D. +0.7 -0.7
complex community Community=Locust bean gum; Passage=1 -0.1 +0.4 N.D. +0.1 -1.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 -0.1 N.D. +0.8 -0.7
complex community Community=arabino-guar; Passage=4 +0.4 +0.4 N.D. +0.5 +0.3
complex community Community=guar; Passage=4 -0.4 +0.3 N.D. +1.0 +0.9
complex community Community=Locust bean gum; Passage=4 +0.5 -0.1 N.D. +1.6 +0.1
complex community Community=Locust bean gum; Passage=4 +0.5 -0.4 N.D. +1.1 +1.1
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