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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF4100 and GFF4101 are separated by 37 nucleotides
GFF4101 and GFF4102 overlap by 4 nucleotides
GFF4102 and GFF4103 are separated by 133 nucleotides
GFF4103 and GFF4104 are separated by 31 nucleotides
GFF4100 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 234 to 1,835
GFF4100
GFF4101 - N-methylhydantoinase B (EC 3.5.2.14), at 1,873 to 3,609
GFF4101
GFF4102 - N-methylhydantoinase B (EC 3.5.2.14), at 3,606 to 5,306
GFF4102
GFF4103 - N-methylhydantoinase A (EC 3.5.2.14), at 5,440 to 7,596
GFF4103
GFF4104 - Cystathionine beta-lyase (EC 4.4.1.8), at 7,628 to 8,842
GFF4104
Group
Condition
GFF4100
GFF4101
GFF4102
GFF4103
GFF4104
complex community
Community=arabino-guar; Passage=4
-0.2
-0.6
-0.1
-0.2
-0.6
complex community
Community=arabino-guar; Passage=4
+0.3
-0.5
-1.2
+0.0
-0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.2
-0.1
-0.6
+0.3
-0.6
complex community
Community=guar; Passage=4
-0.1
-0.2
+0.5
-0.8
-0.6
complex community
Community=guar; Passage=4
-0.1
-0.5
-0.4
-0.4
+0.3
complex community
Community=arabino-guar; Passage=4
-0.1
-0.0
-0.7
+0.2
-0.3
complex community
Community=Kojac gum; Passage=1
-0.4
-0.2
-0.2
-0.4
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
+0.2
-0.0
-0.0
-0.5
vitamin
M9 with Supernatant from Cyptococcus
-0.1
+0.1
+0.2
-0.5
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
-0.1
+0.3
-0.1
-0.6
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.0
-0.5
+0.2
+0.2
-0.5
no phage control
no phage control
-0.2
-0.0
+0.2
-0.1
-0.4
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.0
+0.1
+0.1
-0.8
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.4
-0.4
-0.0
-0.2
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.0
-0.4
+0.3
-0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
+0.3
+0.4
-0.4
-0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.0
+0.5
-0.3
-0.4
vitamin
M9 with Supernatant from Cyptococcus
+0.2
+0.0
+0.1
-0.3
-0.4
phage
phage_bap4
-0.2
+0.2
+0.4
-0.3
-0.4
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.2
+0.4
+0.1
-0.1
-0.5
complex community
Community=guar; Passage=4
-0.3
+0.2
-0.4
+0.1
+0.4
complex community
Community=Kojac gum; Passage=4
+0.5
-0.1
+0.5
-0.3
-0.5
complex community
Community=Locust bean gum; Passage=4
+0.4
-0.5
-0.2
+0.5
-0.1
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
+0.3
-0.0
+0.2
+0.1
-0.5
complex community
Community=Locust bean gum; Passage=4
+0.5
+0.0
-0.5
+0.5
-0.4
phage
phage_bap4
-0.2
+0.1
+0.5
-0.0
-0.2
vitamin
M9 with Supernatant from Cyptococcus
+0.0
+0.1
+0.4
+0.1
-0.3
complex community
Community=arabino-guar; Passage=4
+0.1
-0.1
+0.0
+0.4
+0.4
complex community
Community=guar; Passage=4
+0.2
+0.4
+0.3
-0.3
+0.4
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.1
+0.5
+0.0
+0.7
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