Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_21000	PS417_21005	PS417_21010	PS417_21015	PS417_21020
carbon source	NAG (C)	-0.7	+0.0	-1.3	-0.5	-2.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-4.6	-0.1	+0.3	-0.1	+0.4
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.3	-0.4	-0.7	-0.5	-0.1
carbon source	NAG (C)	+0.1	+0.1	-1.2	-0.4	-2.4
carbon source	L-Leucine (C)	-2.1	-0.2	-1.7	+0.3	-0.0
carbon source	octanoate (C)	-0.6	+0.2	-3.5	-0.2	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.1	-0.4	-0.7	-0.1	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.0	-0.7	-2.8	+0.7
carbon source	L-Arabinose (C)	-0.6	-0.1	-0.2	+0.2	-2.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.8	-0.3	+0.3	-1.7	-0.6
carbon source	L-Arabinose (C)	-0.4	+0.0	-0.1	+0.1	-2.7
soil	soil sample 6; outgrowth in LB	-3.0	+0.1	-1.0	+0.7	+0.1
carbon source	octanoate (C)	-0.7	+0.1	-2.8	-0.1	+0.5
carbon source	2'-Deoxyinosine 5 mM (C)	-1.0	-0.2	-0.2	-1.7	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-3.0	-0.3	+0.2	+0.3	+0.2
root	root sample 6; outgrowth in LB	-2.2	-0.7	-0.5	+0.7	+0.1
rhizosphere	rhizosphere sample 8; outgrowth in LB	-2.0	-0.5	-0.2	+0.4	-0.2
carbon source	L-Lactate (C)	-0.9	+0.1	-0.1	+0.4	-2.1
carbon source	D,L-Lactate (C)	-0.9	-0.0	-0.2	+0.7	-2.1
rhizosphere	rhizosphere sample 2; outgrowth in LB	-2.4	-0.6	-0.3	+1.0	-0.1
soil	soil sample 3; outgrowth in LB	-2.5	-0.0	-0.4	+0.7	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	-3.0	+0.4	-0.1	+0.7	-0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-2.5	-0.2	-0.1	+0.8	+0.2
seeds	Growth on radish seeds for 72 hours	-2.2	+0.3	+0.7	-0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.3	+0.0	-0.1	+0.6	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.2	+0.4	-0.3	+0.8	-0.0
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	-1.8	-0.2	+0.4	+0.8	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.7	-0.1	-0.2	-0.9	+1.1
stress	Neomycin 0.04 mg/ml	+0.9	+0.3	+0.8	-0.7	+0.5
stress	methylglyoxal 0.032 vol%	+1.6	-0.3	+0.4	+0.9	+0.0