Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_20995	PS417_21000	PS417_21005	PS417_21010	PS417_21015
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-4.6	-0.1	+0.3	-0.1
carbon source	octanoate (C)	N.D.	-0.6	+0.2	-3.5	-0.2
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-2.3	-0.4	-0.7	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	+0.0	-0.7	-2.8
carbon source	L-Leucine (C)	N.D.	-2.1	-0.2	-1.7	+0.3
carbon source	octanoate (C)	N.D.	-0.7	+0.1	-2.8	-0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-2.1	-0.4	-0.7	-0.1
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-1.0	-0.2	-0.2	-1.7
soil	soil sample 6; outgrowth in LB	N.D.	-3.0	+0.1	-1.0	+0.7
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	-3.0	-0.3	+0.2	+0.3
carbon source	L-Leucine (C)	N.D.	-1.2	+0.1	-1.2	-0.3
root	root sample 6; outgrowth in LB	N.D.	-2.2	-0.7	-0.5	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	N.D.	-0.8	-0.3	+0.3	-1.7
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	-2.0	-0.5	-0.2	+0.4
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	-2.4	-0.6	-0.3	+1.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	-2.5	+0.1	-0.0	+0.2
soil	soil sample 3; outgrowth in LB	N.D.	-2.5	-0.0	-0.4	+0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-2.5	-0.2	-0.1	+0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	N.D.	-3.0	+0.4	-0.1	+0.7
nophagecontrol	Only library	N.D.	+0.5	-0.0	-0.2	-2.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-2.3	+0.0	-0.1	+0.6
supernatant control	Vogels_fungal_media 0.1X	N.D.	-2.0	+0.3	-0.3	+0.3
seeds	Growth on radish seeds for 72 hours	N.D.	-2.2	+0.3	+0.7	-0.5
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-2.0	-0.2	+0.2	+0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	-2.2	+0.4	-0.3	+0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	-1.8	-0.2	+0.4	+0.8
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	-1.4	-0.3	-0.2	+1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+1.7	-0.1	-0.2	-0.9
stress	Phosphomycin 0.002 mg/ml	N.D.	+1.9	+0.1	+0.7	-0.2
stress	methylglyoxal 0.032 vol%	N.D.	+1.6	-0.3	+0.4	+0.9