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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Number of genes on each side:
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF4090 and GFF4091 are separated by 15 nucleotides
GFF4091 and GFF4092 are separated by 82 nucleotides
GFF4092 and GFF4093 are separated by 805 nucleotides
GFF4093 and GFF4094 are separated by 174 nucleotides
GFF4090 - hypothetical protein, at 4,108,669 to 4,109,736
GFF4090
GFF4091 - hypothetical protein, at 4,109,752 to 4,110,261
GFF4091
GFF4092 - hypothetical protein, at 4,110,344 to 4,112,794
GFF4092
GFF4093 - SSU rRNA ## 16S rRNA, small subunit ribosomal RNA, at 4,113,600 to 4,115,092
GFF4093
GFF4094 - tRNA-Ile-GAT, at 4,115,267 to 4,115,343
GFF4094
Group
Condition
GFF4090
GFF4091
GFF4092
GFF4093
GFF4094
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.4
-0.1
-0.2
-0.6
-1.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.3
-0.2
-0.6
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.2
-0.2
-1.0
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.1
-0.1
-0.5
-0.3
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.1
-0.1
-0.5
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.1
-0.1
-0.2
-0.5
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.0
-0.0
-0.5
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.1
+0.0
-0.7
+0.4
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
-0.3
-0.1
-0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.2
-0.0
-0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.3
-0.0
-0.4
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
-0.2
-0.1
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.2
-0.1
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
+0.0
-0.2
-0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
-0.2
-0.2
-0.3
+0.6
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.1
+0.0
-0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.0
+0.1
-0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
+0.1
-0.0
-0.1
+0.2
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