Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_20950	PS417_20955	PS417_20960	PS417_20965	PS417_20970
nitrogen source	nitrate (N)	+0.1	+0.0	-2.1	-3.8	-3.0
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.8	+0.0	-0.5	-1.3	-0.7
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.6	+0.1	-0.8	-1.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.3	-1.5	-0.6	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.0	-1.0	-0.8	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.2	-1.0	-0.6	-0.4
carbon source	2'-Deoxyinosine 5 mM (C)	-1.6	+0.1	-0.1	+0.0	-0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-1.0	+0.1	-0.7	-0.1	-0.1
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.2	+0.1	-0.4	-1.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.5	+0.3	-0.9	+0.2	+0.1
soil	soil sample 2; outgrowth in LB	-0.7	+0.8	-0.3	-0.2	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.9	+0.1	-0.2	+0.5	+0.2
stress	Doxycycline hyclate 0.001 mg/ml	-0.7	+0.1	+0.6	-0.3	+0.2
seeds	Growth on radish seeds for 24 hours	+0.7	-0.1	+0.4	-0.6	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	-0.2	-0.5	+0.6	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI dcr2mutant	+0.3	+0.2	-0.6	+0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+1.1	+0.0	-0.3	-0.3	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.9	+0.6	+0.9	+0.2	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.5	+0.2	+0.5	+0.4
soil	soil sample 6; outgrowth in LB	+0.7	+0.9	-0.2	+0.0	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.6	+0.3	-0.3	+0.5	+0.4
soil	soil sample 5; outgrowth in LB	+0.2	+0.8	+0.3	-0.1	+0.5
rhizosphere	rhizosphere sample 8; outgrowth in LB	-0.1	+1.1	+0.1	+0.3	+0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	-0.2	+0.5	+0.9	-0.1
soil	soil sample 4; outgrowth in LB	+1.0	+0.9	+0.1	-0.1	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	+0.1	+0.4	+0.5	+0.7
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.0	+1.5	+0.2	+0.2	+0.1
root	root sample 6; outgrowth in LB	-0.5	+1.8	-0.1	+0.3	+0.7
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.7	+1.6	-0.2	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.2	+0.4	+0.7	+0.9