Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_20935	PS417_20940	PS417_20945	PS417_20950	PS417_20955
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.4	+0.2	-1.6	+0.1
motility	inner cut, LB soft agar motility assay	N.D.	-0.2	-0.2	-0.9	-0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	-1.2	-0.3	-0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-1.3	-0.6	+0.6	+0.0
stress	Doxycycline hyclate 0.001 mg/ml	N.D.	-0.5	+0.1	-0.7	+0.1
phage	JP1 MOI 10	N.D.	-0.6	+0.1	-0.8	+0.3
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.2	-0.3	-0.9	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.6	-0.5	+0.3
soil	soil sample 8; outgrowth in LB	N.D.	-0.1	-0.7	-0.1	+0.6
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.6	-0.1	-0.7	-0.1
soil	soil sample 2; outgrowth in LB	N.D.	-0.2	-0.0	-0.7	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.2	+0.6	-0.9	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.4	-0.0	-0.9	+0.6
phage	P. simiae OR Antrim MOI 0.1	N.D.	-0.2	+1.0	-0.5	-0.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.1	+0.6	-0.7	+0.2
soil	soil sample 3; outgrowth in LB	N.D.	-0.2	-0.4	-0.0	+0.9
stress	Gentamicin 0.008 mg/ml	N.D.	-0.6	+0.6	+0.5	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.1	-0.6	+0.4	+0.5
root	root sample 6; outgrowth in LB	N.D.	-0.1	-0.6	-0.5	+1.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.9	-0.5	+0.3	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.6	+0.2	-0.5	+0.5
rhizosphere	rhizosphere sample 2; outgrowth in LB	N.D.	-0.1	-0.4	+0.0	+1.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	N.D.	+0.3	+0.8	-0.2	+0.4
rhizosphere	rhizosphere sample 8; outgrowth in LB	N.D.	+0.5	-0.1	-0.1	+1.1
soil	soil sample 5; outgrowth in LB	N.D.	+0.8	-0.3	+0.2	+0.8
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	N.D.	+0.3	+0.6	+0.4	+0.2
soil	soil sample 4; outgrowth in LB	N.D.	-0.1	-0.1	+1.0	+0.9
soil	soil sample 6; outgrowth in LB	N.D.	+0.4	-0.3	+0.7	+0.9
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	-0.2	-0.3	+0.7	+1.6
soil	soil sample 7; outgrowth in LB	N.D.	+0.6	+0.0	+0.3	+0.9