Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_20900 and PS417_20905 are separated by 139 nucleotidesPS417_20905 and PS417_20910 are separated by 226 nucleotidesPS417_20910 and PS417_20915 are separated by 37 nucleotidesPS417_20915 and PS417_20920 are separated by 238 nucleotides PS417_20900: PS417_20900 - guanine deaminase, at 4,544,031 to 4,545,335 _20900 PS417_20905: PS417_20905 - GntR family transcriptional regulator, at 4,545,475 to 4,546,239 _20905 PS417_20910: PS417_20910 - membrane protein, at 4,546,466 to 4,547,656 _20910 PS417_20915: PS417_20915 - hypothetical protein, at 4,547,694 to 4,548,038 _20915 PS417_20920: PS417_20920 - D-alanyl-D-alanine carboxypeptidase, at 4,548,277 to 4,549,737 _20920
Group Condition PS417_20900 PS417_20905 PS417_20910 PS417_20915 PS417_20920
soil soil sample 2; outgrowth in LB -0.3 N.D. -0.9 -1.1 -0.3
solid stress Fraxetin 3 mM; solid stress -0.4 N.D. -0.4 -0.4 -0.7
soil soil sample 5; outgrowth in LB +0.1 N.D. -0.4 -0.6 -0.8
soil soil sample 8; outgrowth in LB -0.3 N.D. -0.2 -1.0 -0.1
soil soil sample 6; outgrowth in LB +0.1 N.D. -0.6 -0.7 -0.4
soil soil sample 3; outgrowth in LB +0.1 N.D. -0.5 -0.7 -0.5
solid stress Fraxetin 3 mM; solid stress -0.3 N.D. -0.1 -0.7 -0.5
root root sample 6; outgrowth in LB -0.2 N.D. -0.3 -0.7 -0.4
phage P. simiae OR1 MOI 0.1 -0.2 N.D. -0.5 -0.3 -0.5
phage P. simiae OR Antrim MOI 1 -0.1 N.D. -0.5 -0.5 -0.3
solid stress Fraxetin 3 mM; solid stress -0.3 N.D. -0.1 -0.4 -0.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.1 N.D. -0.2 -0.5 -0.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 N.D. -0.2 -0.5 -0.5
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.0 N.D. +0.1 -0.9 -0.2
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.0 N.D. -0.4 -0.9 +0.1
soil soil sample 4; outgrowth in LB -0.3 N.D. -0.3 -0.6 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.1 N.D. +0.1 +0.1 -0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 N.D. +0.3 -0.8 -0.3
seeds Growth on radish seeds for 72 hours +0.3 N.D. -0.6 -0.5 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.9 N.D. +0.1 +0.2 -0.1
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.2 N.D. -0.0 -0.9 +0.1
phage P. simiae ORA MOI 0.1 -0.3 N.D. -0.2 -0.5 +0.3
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.0 N.D. +0.3 -0.9 +0.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 N.D. +0.4 -0.3 -0.6
phage JP1 MOI 10 -0.1 N.D. -0.4 +0.6 -0.5
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 N.D. -0.7 +0.5 +0.4
stress Phosphomycin 0.003 mg/ml +0.2 N.D. -0.3 +0.6 -0.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 N.D. +0.5 +0.2 -0.5
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.3 N.D. -0.4 +0.5 +0.2
stress Nalidixic 0.025 mg/ml +0.1 N.D. +0.5 +0.5 +0.3
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