Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_20860	PS417_20865	PS417_20870	PS417_20875	PS417_20880
stress	Cisplatin 0.01 mg/ml	-0.4	N.D.	N.D.	-1.5	-1.9
phage	JP1 MOI 1	-0.0	N.D.	N.D.	+0.0	-3.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	N.D.	N.D.	-2.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	N.D.	N.D.	-0.3	-2.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	N.D.	N.D.	-1.0	-1.8
motility	inner cut, LB soft agar motility assay	-0.2	N.D.	N.D.	-0.7	-1.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.3	N.D.	N.D.	-0.6	-1.6
liquid stress	Scopoletin 3 mM; liquid stress	+0.1	N.D.	N.D.	-0.7	-1.8
stress	nitrate 200 mM	-0.3	N.D.	N.D.	-0.6	-1.5
stress	Gentamicin 0.008 mg/ml	-0.8	N.D.	N.D.	-0.8	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	N.D.	N.D.	-0.9	-0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	N.D.	N.D.	+0.2	-2.3
soil	soil sample 8; outgrowth in LB	-0.7	N.D.	N.D.	-0.4	-1.0
motility	outer cut, LB soft agar motility assay	+0.3	N.D.	N.D.	-1.0	-1.4
liquid stress	80% Methanol 2 mM; liquid stress	+0.0	N.D.	N.D.	-1.1	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	N.D.	N.D.	-0.5	-1.7
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	N.D.	N.D.	-0.4	-1.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	N.D.	N.D.	-1.8	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	N.D.	N.D.	-1.8	+0.4
phage	JP1 MOI 10	+0.3	N.D.	N.D.	+0.6	-2.4
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	N.D.	N.D.	+1.0	-1.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	N.D.	N.D.	+0.7	-1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	N.D.	N.D.	-1.6	+1.2
phage	P. simiae OR1 MOI 0.1	-0.6	N.D.	N.D.	-0.6	+1.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.2	N.D.	N.D.	-0.9	+0.8
seeds	Growth on radish seeds for 72 hours	+0.5	N.D.	N.D.	-1.0	+1.1
carbon source	octanoate (C)	+0.1	N.D.	N.D.	+0.1	+1.9
carbon source	octanoate (C)	-0.1	N.D.	N.D.	+0.4	+1.9
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.2	N.D.	N.D.	+1.0	+1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.7	N.D.	N.D.	+0.4	+1.5