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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 16 experiments (either direction), sorted by average fitness
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500 nt
GFF4071 and GFF4072 overlap by 4 nucleotides
GFF4072 and GFF4073 are separated by 77 nucleotides
GFF4073 and GFF4074 are separated by 28 nucleotides
GFF4074 and GFF4075 are separated by 98 nucleotides
GFF4071 - glutathione-dependent formaldehyde-activating, GFA, at 4,084,290 to 4,084,772
GFF4071
GFF4072 - ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13), at 4,084,769 to 4,085,524
GFF4072
GFF4073 - hypothetical protein, at 4,085,602 to 4,086,003
GFF4073
GFF4074 - Similar to hypothetical protein DUF454, at 4,086,032 to 4,086,385
GFF4074
GFF4075 - Two-component system sensor histidine kinase, at 4,086,484 to 4,087,842
GFF4075
Group
Condition
GFF4071
GFF4072
GFF4073
GFF4074
GFF4075
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
-0.6
-0.2
-0.4
-1.5
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.6
+0.1
-0.3
+0.4
-1.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.3
+0.0
+0.5
-1.2
-1.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.1
+0.1
-0.7
-0.9
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
-0.2
-0.0
-0.0
-1.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
-0.1
-0.1
-0.4
-1.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
-0.1
-0.2
-0.3
-1.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.3
-0.0
-0.0
-1.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
+0.1
-0.1
-0.1
-1.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.1
-0.2
-0.1
-1.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
+0.2
+0.1
-0.1
-1.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.1
+0.0
-0.0
-0.9
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.2
+0.0
+0.4
-1.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
-0.1
+0.2
-0.2
-0.8
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.1
+0.0
+0.2
-0.6
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.2
+0.2
-0.0
-0.7
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