Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_20845 and PS417_20850 are separated by 157 nucleotidesPS417_20850 and PS417_20855 are separated by 20 nucleotidesPS417_20855 and PS417_20860 are separated by 453 nucleotidesPS417_20860 and PS417_20865 are separated by 176 nucleotides PS417_20845: PS417_20845 - hypothetical protein, at 4,525,805 to 4,526,851 _20845 PS417_20850: PS417_20850 - hypothetical protein, at 4,527,009 to 4,528,970 _20850 PS417_20855: PS417_20855 - hypothetical protein, at 4,528,991 to 4,529,422 _20855 PS417_20860: PS417_20860 - DNA polymerase III subunit gamma/tau, at 4,529,876 to 4,531,039 _20860 PS417_20865: PS417_20865 - NAD-dependent DNA ligase LigA, at 4,531,216 to 4,533,573 _20865
Group Condition PS417_20845 PS417_20850 PS417_20855 PS417_20860 PS417_20865
stress Gentamicin 0.008 mg/ml +0.1 -1.5 -3.3 -0.8 N.D.
soil soil sample 8; outgrowth in LB -0.2 -0.5 -3.6 -0.7 N.D.
motility outer cut, LB soft agar motility assay +0.0 -1.8 -2.7 -0.3 N.D.
motility outer cut, LB soft agar motility assay +0.0 -1.6 -3.3 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.7 -3.7 +0.2 N.D.
motility outer cut, LB soft agar motility assay -0.5 -1.1 -3.1 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -0.3 -3.8 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 -0.6 -3.6 +0.1 N.D.
soil soil sample 6; outgrowth in LB -0.1 -0.4 -3.5 -0.2 N.D.
motility inner cut, LB soft agar motility assay -0.5 -0.7 -2.8 -0.2 N.D.
liquid stress 80% Methanol 3 mM; liquid stress +0.1 -0.3 -3.7 -0.1 N.D.
stress R2A with Fusaric 120 ug/mL -0.1 -0.1 -3.4 -0.4 N.D.
phage P. simiae OR1 MOI 0.1 -0.6 -0.3 -2.3 -0.6 N.D.
liquid stress 80% Methanol 3 mM; liquid stress -0.4 +0.0 -3.1 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.2 -3.6 +0.3 N.D.
liquid stress Scopoletin 3 mM; liquid stress +0.0 -0.3 -3.3 -0.1 N.D.
soil soil sample 2; outgrowth in LB -0.2 -0.7 -2.4 -0.2 N.D.
motility outer cut, LB soft agar motility assay -0.0 -1.2 -1.9 -0.2 N.D.
motility inner cut, LB soft agar motility assay -0.2 -0.9 -2.3 +0.0 N.D.
liquid stress 80% Methanol 2 mM; liquid stress +0.2 -0.0 -3.5 +0.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.1 -0.2 -3.6 +0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.5 -0.2 -2.9 +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 +0.1 -2.2 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -0.2 -2.9 +0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.3 -2.7 +0.1 N.D.
motility inner cut, LB soft agar motility assay +0.1 -1.0 -2.0 +0.0 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.0 -2.8 -0.4 N.D.
phage Wcs_0.1 +0.3 +0.4 -2.6 -0.2 N.D.
phage JP1 MOI 10 +0.2 +0.4 -2.7 +0.3 N.D.
stress methylglyoxal 0.032 vol% +0.0 +0.5 +2.1 +0.5 N.D.
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