Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_20785 and PS417_20790 are separated by 80 nucleotidesPS417_20790 and PS417_20795 are separated by 134 nucleotidesPS417_20795 and PS417_20800 are separated by 132 nucleotidesPS417_20800 and PS417_20810 are separated by 1218 nucleotides PS417_20785: PS417_20785 - transcriptional regulator, at 4,515,588 to 4,516,322 _20785 PS417_20790: PS417_20790 - adenine phosphoribosyltransferase, at 4,516,403 to 4,516,951 _20790 PS417_20795: PS417_20795 - acyl-CoA dehydrogenase, at 4,517,086 to 4,518,234 _20795 PS417_20800: PS417_20800 - recombination protein RecR, at 4,518,367 to 4,518,969 _20800 PS417_20810: PS417_20810 - hypothetical protein, at 4,520,188 to 4,520,526 _20810
Group Condition PS417_20785 PS417_20790 PS417_20795 PS417_20800 PS417_20810
stress Cisplatin 0.01 mg/ml -0.8 -0.1 +0.6 -5.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.0 +0.1 -0.4 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.8 -1.0 -0.6 -1.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -4.7 +0.2 +0.3 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -3.2 -0.3 -0.3 -0.1 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -2.0 -1.2 -0.1 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.9 -0.5 +0.0 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.3 -0.5 -0.4 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.1 -0.1 +0.1 -0.4 N.D.
stress NaCl stress 250 mM -3.2 -0.2 -0.1 +0.0 N.D.
supernatant control Vogels_fungal_media 0.1X -3.1 -0.2 -0.2 +0.1 N.D.
temperature LB_noSalt 30C -3.1 -0.1 -0.1 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.6 -0.4 -0.2 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.4 -0.7 -0.1 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.3 -1.1 -0.9 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.2 -0.4 -0.2 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.5 -0.2 -0.4 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.3 -0.1 -0.2 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -1.0 -0.7 -0.3 -0.9 N.D.
supernatant Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X -2.5 +0.0 -0.2 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.3 -0.1 -0.2 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -2.9 -0.2 +0.2 -0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.6 -0.3 +0.1 +0.2 N.D.
stress NaCl stress 250 mM -3.0 +0.2 +0.3 -0.1 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -2.2 -0.3 +0.3 -0.1 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus -2.3 +0.8 -0.1 -0.3 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -1.5 -0.3 +1.0 -0.2 N.D.
solid stress Fraxetin 3 mM; solid stress +2.0 +0.7 +0.1 -0.4 N.D.
solid stress Fraxetin 3 mM; solid stress +2.2 +0.3 +0.3 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.4 +0.8 +0.7 +0.3 N.D.
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