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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF404 and GFF405 are separated by 26 nucleotides
GFF405 and GFF406 are separated by 27 nucleotides
GFF406 and GFF407 are separated by 73 nucleotides
GFF407 and GFF408 are separated by 53 nucleotides
GFF404 - Hydrolase, alpha/beta fold family, at 439,206 to 440,198
GFF404
GFF405 - 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 440,225 to 440,995
GFF405
GFF406 - hypothetical protein, at 441,023 to 441,727
GFF406
GFF407 - no description, at 441,801 to 442,283
GFF407
GFF408 - Two-component system response regulator OmpR, at 442,337 to 443,068
GFF408
Group
Condition
GFF404
GFF405
GFF406
GFF407
GFF408
complex community
Community=guar; Passage=4
-0.0
-0.5
-1.3
-0.4
-2.6
complex community
Community=guar; Passage=4
-0.0
-0.1
-1.8
-0.3
-2.6
complex community
Community=Locust bean gum; Passage=4
+0.3
-1.2
-0.6
-0.5
-2.5
complex community
Community=Kojac gum; Passage=4
-0.0
-0.5
-1.0
-0.3
-2.6
complex community
Community=guar; Passage=4
-0.1
-0.2
-1.1
+0.2
-2.9
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
-0.2
-0.3
+0.2
-3.5
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.1
-0.1
-0.2
-3.6
complex community
Community=guar; Passage=4
-0.1
+0.0
-0.7
-0.2
-2.9
phage
phage_bap4
-0.1
-0.1
+0.3
+0.3
-4.1
complex community
Community=arabino-guar; Passage=4
-0.1
+0.0
-0.9
+0.0
-2.7
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.2
-0.4
-0.3
-2.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.0
+0.2
+0.0
+0.1
-3.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.0
-0.0
+0.4
+0.1
-3.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
-0.0
+0.6
+0.0
-3.7
vitamin
M9 with calcium pantothenate 10 mg/mL
-0.1
+0.0
+0.6
+0.1
-3.7
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
-0.1
+0.1
-0.0
+0.3
-3.3
phage
phage_bap4
-0.0
-0.2
+0.5
-0.0
-3.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.1
-0.0
+0.6
-0.1
-3.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.1
-0.0
+0.5
-0.1
-3.5
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.0
+0.7
+0.1
-3.5
complex community
Community=arabino-guar; Passage=4
+0.1
-0.0
+0.3
-0.3
-2.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.0
-0.2
+0.3
+0.2
-2.8
complex community
Community=arabino-guar; Passage=4
-0.0
-0.2
+0.5
-0.0
-2.8
complex community
Community=arabino-guar; Passage=4
-0.1
-0.6
+0.6
+0.6
-3.0
vitamin
M9 with Supernatant from Cyptococcus
-0.2
+0.1
+0.6
-0.1
-2.8
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.2
+0.2
+0.3
-2.8
complex community
Community=Locust bean gum; Passage=4
+0.2
+0.3
+0.3
-0.3
-2.5
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.1
+0.6
+0.3
-2.6
complex community
Community=Locust bean gum; Passage=4
+0.2
-0.6
+1.4
-0.1
-2.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.3
+0.2
+0.5
-0.0
-2.6
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