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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF4057 and GFF4058 are separated by 8 nucleotides
GFF4058 and GFF4059 are separated by 123 nucleotides
GFF4059 and GFF4060 overlap by 4 nucleotides
GFF4060 and GFF4061 are separated by 57 nucleotides
GFF4057 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 4,072,789 to 4,073,538
GFF4057
GFF4058 - Uncharacterized MFS-type transporter, at 4,073,547 to 4,074,836
GFF4058
GFF4059 - Transcriptional regulator, AcrR family, at 4,074,960 to 4,075,508
GFF4059
GFF4060 - GCN5-related N-acetyltransferase, at 4,075,505 to 4,075,990
GFF4060
GFF4061 - RNA polymerase sigma factor RpoH, at 4,076,048 to 4,076,962
GFF4061
Group
Condition
GFF4057
GFF4058
GFF4059
GFF4060
GFF4061
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.5
-0.0
-0.3
-1.1
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
-0.2
-0.0
-0.5
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
-0.1
+0.0
-0.7
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.4
+0.0
-0.0
-0.3
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
+0.0
-0.1
-0.4
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.2
+0.1
-0.5
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.1
-0.1
-0.4
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.0
-0.0
-0.5
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.2
-0.1
+0.1
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.0
-0.1
+0.1
-0.3
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.1
+0.0
-0.1
-0.3
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.1
-0.1
-0.2
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.0
-0.2
-0.1
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
+0.2
-0.0
-0.3
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.0
+0.1
-0.3
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.0
+0.1
+0.1
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.2
+0.1
-0.4
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.1
+0.1
+0.2
N.D.
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