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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF4055 and GFF4056 are separated by 375 nucleotides
GFF4056 and GFF4057 are separated by 84 nucleotides
GFF4057 and GFF4058 are separated by 8 nucleotides
GFF4058 and GFF4059 are separated by 123 nucleotides
GFF4055 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 4,067,716 to 4,068,984
GFF4055
GFF4056 - Oar protein, at 4,069,360 to 4,072,704
GFF4056
GFF4057 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 4,072,789 to 4,073,538
GFF4057
GFF4058 - Uncharacterized MFS-type transporter, at 4,073,547 to 4,074,836
GFF4058
GFF4059 - Transcriptional regulator, AcrR family, at 4,074,960 to 4,075,508
GFF4059
Group
Condition
GFF4055
GFF4056
GFF4057
GFF4058
GFF4059
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-2.9
+0.0
+0.0
-0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-1.9
-0.2
-0.2
-0.2
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-2.3
+0.0
-0.0
-0.1
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-2.7
+0.1
+0.3
+0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-1.4
-0.2
-0.4
+0.0
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.9
-0.0
-0.1
-0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.2
-0.0
-0.5
-0.0
-0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.7
-0.0
-0.2
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
-0.0
-0.3
-0.2
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.8
-0.1
+0.1
+0.0
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.9
+0.1
-0.1
+0.2
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.7
+0.0
+0.0
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.2
-0.0
-0.0
-0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.4
-0.0
-0.0
+0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.0
+0.1
+0.0
-0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.1
+0.0
+0.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.3
-0.0
+0.0
-0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.5
-0.1
-0.0
-0.0
+0.1
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