Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_20765 and PS417_20770 overlap by 8 nucleotidesPS417_20770 and PS417_20775 are separated by 103 nucleotidesPS417_20775 and PS417_20780 are separated by 1 nucleotidesPS417_20780 and PS417_20785 are separated by 152 nucleotides PS417_20765: PS417_20765 - cytochrome oxidase maturation protein Cbb3, at 4,512,592 to 4,512,804 _20765 PS417_20770: PS417_20770 - cytochrome biogenesis protein, at 4,512,797 to 4,513,480 _20770 PS417_20775: PS417_20775 - coproporphyrinogen III oxidase, at 4,513,584 to 4,514,966 _20775 PS417_20780: PS417_20780 - hypothetical protein, at 4,514,968 to 4,515,435 _20780 PS417_20785: PS417_20785 - transcriptional regulator, at 4,515,588 to 4,516,322 _20785
Group Condition PS417_20765 PS417_20770 PS417_20775 PS417_20780 PS417_20785
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -3.4 +0.4 -4.0
stress NaCl stress 250 mM N.D. N.D. -2.6 -0.2 -3.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.0 -0.1 -4.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.9 +0.1 -3.1
temperature LB_noSalt 30C N.D. N.D. -1.8 +0.2 -3.1
stress NaCl stress 250 mM N.D. N.D. -1.7 +0.0 -3.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.2 -0.1 -2.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.5 -0.1 -2.9
stress NaCl stress 25 mM N.D. N.D. -2.3 +0.1 -2.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.4 -0.1 -2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.5 -0.2 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.3 -0.3 -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.1 -0.4 -2.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.9 +0.0 -3.2
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.1 -0.6 -1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -1.0 -0.4 -2.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.3 -0.3 -2.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.0 -0.2 -2.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -3.5 +0.1 -0.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.8 +0.2 -2.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -0.9 -0.3 -2.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 N.D. N.D. -2.5 -0.4 -0.6
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.8 -0.4 -0.3
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -2.2 +0.2 -1.3
agar plate interaction control Parafilmed volatile agar plate with no fungus N.D. N.D. -1.5 +0.4 -2.3
ecofab LB in EcoFAB_3.5mL N.D. N.D. -1.1 +0.4 -2.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 N.D. N.D. -1.1 +0.4 -2.3
supernatant control Vogels_fungal_media 0.1X N.D. N.D. +0.1 +0.3 -3.1
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -2.6 -0.2 +2.0
solid stress Fraxetin 3 mM; solid stress N.D. N.D. -1.5 -0.2 +1.9
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