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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF4045 and GFF4046 are separated by 6 nucleotides
GFF4046 and GFF4047 overlap by 32 nucleotides
GFF4047 and GFF4048 are separated by 171 nucleotides
GFF4048 and GFF4049 are separated by 119 nucleotides
GFF4045 - NAD-dependent protein deacetylase of SIR2 family, at 4,059,029 to 4,059,727
GFF4045
GFF4046 - anti-FecI sigma factor FecR, at 4,059,734 to 4,060,714
GFF4046
GFF4047 - RNA polymerase ECF-type sigma factor, at 4,060,683 to 4,061,288
GFF4047
GFF4048 - hypothetical protein, at 4,061,460 to 4,061,660
GFF4048
GFF4049 - tRNA-Leu-TAG, at 4,061,780 to 4,061,864
GFF4049
Group
Condition
GFF4045
GFF4046
GFF4047
GFF4048
GFF4049
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.4
+0.2
-1.1
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.2
-0.5
-0.1
+0.1
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.1
-0.2
+0.1
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.1
-0.3
-0.1
+0.1
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.0
-0.1
-0.2
+0.1
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.3
+0.3
+0.3
-0.5
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.1
-0.1
+0.2
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
-0.1
-0.3
+0.0
+0.3
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.3
-0.0
-0.0
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
+0.1
+0.1
+0.0
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.3
+0.1
+0.1
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.4
+0.2
-0.1
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
+0.4
+0.1
-0.3
N.D.
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.3
+0.2
+0.0
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.4
+0.2
-0.1
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.5
+0.3
-0.4
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.0
+0.7
+0.4
-0.4
N.D.
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.0
+0.6
+0.3
+0.2
N.D.
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