Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_20715	PS417_20720	PS417_20725	PS417_20730	PS417_20735
ecofab	LB in EcoFAB_3.5mL	-4.1	+0.3	-0.5	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-3.3	-0.8	+0.4	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.5	-0.3	-0.6	N.D.	N.D.
phage	P. simiae Grant Run MOI 0.1	-1.6	-0.5	-1.0	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-2.8	-0.4	+0.4	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.7	-0.5	-1.4	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.2	-0.4	-0.0	N.D.	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-2.1	+0.1	-0.6	N.D.	N.D.
liquid stress	80% Methanol 2 mM; liquid stress	-2.3	+0.5	-0.7	N.D.	N.D.
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 1	-2.6	-0.2	+0.3	N.D.	N.D.
stress	TSB 0.5x with 6-methoxy-2(3H)-benzoxazolone 1250 uM; timepoint 2	-2.2	-0.5	+0.3	N.D.	N.D.
liquid stress	80% Methanol 2 mM; liquid stress	-0.7	+0.1	-1.6	N.D.	N.D.
phage	P. simiae OR Antrim MOI 1	+0.2	-0.8	-1.6	N.D.	N.D.
rhizosphere	rhizosphere sample 1; outgrowth in LB	+0.2	-1.1	-1.2	N.D.	N.D.
phage	JP1 MOI 10	-2.0	-0.3	+0.7	N.D.	N.D.
liquid stress	Scopoletin 2 mM; liquid stress	-0.8	+0.6	-1.3	N.D.	N.D.
liquid stress	Scopoletin 3 mM; liquid stress	-1.7	+0.7	-0.3	N.D.	N.D.
root	root sample 6; outgrowth in LB	+1.0	-0.4	-1.8	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.9	+1.0	+0.3	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.6	+0.4	+0.6	N.D.	N.D.
soil	soil sample 7; outgrowth in LB	+0.3	+0.7	-1.5	N.D.	N.D.
rhizosphere	rhizosphere sample 2; outgrowth in LB	+1.3	-0.3	-1.3	N.D.	N.D.
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.3	-0.3	-0.9	N.D.	N.D.
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-1.3	+0.7	+1.0	N.D.	N.D.
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+1.9	-0.2	-1.2	N.D.	N.D.
in planta	Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-1.1	+0.3	+2.0	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.9	-0.4	+0.5	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.9	-0.2	+0.8	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.0	+0.7	+0.8	N.D.	N.D.
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+2.0	+0.0	+0.6	N.D.	N.D.