Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_20695 and PS417_20700 are separated by 79 nucleotidesPS417_20700 and PS417_20705 are separated by 10 nucleotidesPS417_20705 and PS417_20710 are separated by 3 nucleotidesPS417_20710 and PS417_20715 overlap by 4 nucleotides PS417_20695: PS417_20695 - alpha/beta hydrolase, at 4,499,445 to 4,500,137 _20695 PS417_20700: PS417_20700 - cbb3-type cytochrome c oxidase subunit I, at 4,500,217 to 4,501,641 _20700 PS417_20705: PS417_20705 - cbb3-type cytochrome c oxidase subunit II, at 4,501,652 to 4,502,260 _20705 PS417_20710: PS417_20710 - cytochrome C oxidase, at 4,502,264 to 4,502,464 _20710 PS417_20715: PS417_20715 - cytochrome Cbb3, at 4,502,461 to 4,503,408 _20715
Group Condition PS417_20695 PS417_20700 PS417_20705 PS417_20710 PS417_20715
ecofab LB in EcoFAB_3.5mL +0.2 -1.2 -2.0 N.D. -4.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.5 -2.1 N.D. -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 -1.3 -3.3 N.D. -1.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 -1.5 -2.0 N.D. -2.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -1.1 -2.1 N.D. -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -0.9 -0.9 N.D. -3.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.0 -1.6 -1.5 N.D. -1.8
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.2 -0.3 -2.8 N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -0.9 -2.6 N.D. -0.4
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.6 -0.7 -1.4 N.D. -2.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 -1.5 -2.2 N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.4 -1.2 -1.3 N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.9 -0.6 -0.9 N.D. -1.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 -1.2 -2.1 N.D. -0.9
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Aspartic Acid; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 -1.7 -0.9 N.D. -1.4
liquid stress 80% Methanol 2 mM; liquid stress -0.3 -0.5 -0.8 N.D. -2.3
ecofab LB 0.5x in EcoFAB_3.5mL -0.3 -1.2 -1.2 N.D. -1.2
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.9 -1.4 N.D. -1.4
carbon source L-Valine (C) -1.0 -0.8 -0.9 N.D. -1.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.4 -0.7 -1.7 N.D. -1.2
no stress control TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1 -0.1 -0.3 -1.5 N.D. -1.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 -0.2 -0.7 -2.0 N.D. -0.8
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 -1.0 -1.9 N.D. -1.2
phage JP1 MOI 10 -0.2 +0.2 -1.4 N.D. -2.0
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.2 -0.8 -1.6 N.D. -1.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.8 -1.2 N.D. +1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.1 +0.3 +1.4 N.D. +2.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.0 +1.2 +1.1 N.D. +1.9
supernatant Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.0 +1.2 +1.5 N.D. +1.7
root root sample 6; outgrowth in LB +0.4 +1.7 +1.9 N.D. +1.0
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