Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02045	PS417_02050	PS417_02055	PS417_02060	PS417_02065
seeds	Growth on radish seeds for 72 hours	-0.9	N.D.	-0.6	-0.7	-0.4
seeds	Growth on radish seeds for 72 hours	-1.1	N.D.	-0.7	+0.0	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	N.D.	-0.5	-0.4	-0.5
phage	P. simiae ORA MOI 10	-0.6	N.D.	-0.7	-0.5	-0.3
phage	P. simiae OR Antrim MOI 10	-1.4	N.D.	-0.2	+0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	N.D.	-1.4	-0.2	+0.1
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	N.D.	-0.7	+0.2	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.9	N.D.	-0.1	+0.5	+0.1
motility	inner cut, LB soft agar motility assay	-1.0	N.D.	+0.6	-0.5	-0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.5	N.D.	-0.7	+0.4	-0.4
solid stress	Fraxetin 3 mM; solid stress	-1.0	N.D.	+0.3	+0.4	-0.7
agar plate interaction control	Taped volatile agar plate with no fungus	-1.3	N.D.	+0.1	+0.5	-0.2
phage	P. simiae OR Antrim MOI 1	-1.0	N.D.	-0.2	-0.1	+0.5
stress	Doxycycline hyclate 0.001 mg/ml	+0.4	N.D.	-0.6	+0.3	-0.8
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	N.D.	-0.6	+0.9	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	N.D.	-0.6	+0.7	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	N.D.	-0.8	-0.5	+0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.1	N.D.	-0.9	+0.0	+0.8
seeds	Growth on radish seeds for 24 hours	+0.1	N.D.	+1.0	-0.6	-0.4
carbon source	L-Valine (C)	+0.6	N.D.	-0.3	-0.6	+0.4
phage	P. simiae OR Antrim MOI 10	-1.0	N.D.	+0.0	+0.6	+0.5
phage	JP1 MOI 0.1	-1.0	N.D.	+0.8	-0.1	+0.4
phage	P. simiae Grant Run MOI 0.1	+0.8	N.D.	-0.5	-0.3	+0.2
stress	Neomycin 0.04 mg/ml	+0.4	N.D.	-0.5	-0.5	+1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.9	N.D.	+1.1	+0.1	+0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.4	N.D.	+1.0	+0.1	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	N.D.	+0.3	+0.5	-0.3
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.7	N.D.	+0.7	+0.3	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	N.D.	+0.2	+0.5	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.9	N.D.	+0.9	+0.3	-0.0