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Cofit
Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF402 and GFF403 are separated by 395 nucleotides
GFF403 and GFF404 are separated by 10 nucleotides
GFF404 and GFF405 are separated by 26 nucleotides
GFF405 and GFF406 are separated by 27 nucleotides
GFF402 - hypothetical protein, at 436,209 to 436,559
GFF402
GFF403 - Inactive (p)ppGpp 3'-pyrophosphohydrolase domain / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase I, at 436,955 to 439,195
GFF403
GFF404 - Hydrolase, alpha/beta fold family, at 439,206 to 440,198
GFF404
GFF405 - 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 440,225 to 440,995
GFF405
GFF406 - hypothetical protein, at 441,023 to 441,727
GFF406
Group
Condition
GFF402
GFF403
GFF404
GFF405
GFF406
complex community
Community=guar; Passage=4
+0.1
-1.1
-0.0
-0.1
-1.8
complex community
Community=guar; Passage=4
+0.1
-0.9
-0.0
-0.5
-1.3
complex community
Community=Kojac gum; Passage=4
+0.1
-1.1
-0.0
-0.5
-1.0
complex community
Community=guar; Passage=4
-0.0
-0.9
-0.1
-0.2
-1.1
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.5
+0.3
-1.2
-0.6
complex community
Community=guar; Passage=4
-0.2
-1.0
-0.1
+0.0
-0.7
complex community
Community=arabino-guar; Passage=4
+0.2
-1.2
-0.1
+0.0
-0.9
phage
phage_bap4
-0.3
-0.2
-0.1
-0.0
-0.6
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.0
-0.2
-0.2
-0.2
-0.4
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
-0.3
-0.1
-0.2
-0.4
complex community
Community=arabino-guar; Passage=4
+0.3
-1.0
-0.1
-0.6
+0.6
complex community
Community=arabino-guar; Passage=4
-0.2
-0.8
-0.0
-0.2
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
-0.3
-0.1
-0.2
-0.3
complex community
Community=arabino-guar; Passage=4
+0.0
-0.9
+0.1
-0.0
+0.3
phage
phage_bap4
-0.3
-0.2
-0.1
+0.0
+0.4
complex community
Community=Locust bean gum; Passage=4
-0.2
-0.6
+0.1
-0.1
+0.6
vitamin
M9 with Supernatant from Cyptococcus
-0.1
-0.3
-0.1
-0.0
+0.7
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
-0.3
-0.2
-0.1
+0.6
phage
phage_bap4
+0.0
-0.2
-0.0
-0.2
+0.5
vitamin
M9 with Supernatant from Cyptococcus
-0.0
-0.4
-0.2
+0.1
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.1
-0.4
-0.1
+0.0
+0.6
complex community
Community=Locust bean gum; Passage=4
+0.3
-0.8
+0.2
-0.6
+1.4
complex community
Community=Locust bean gum; Passage=4
+0.5
-0.6
+0.2
+0.3
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.1
+0.1
-0.0
+0.1
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.0
+0.6
+0.2
-0.1
+0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.1
+0.4
+0.0
-0.0
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
-0.1
+0.4
+0.1
-0.0
+0.5
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.0
+0.6
+0.2
-0.2
+0.4
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
+0.5
+0.1
-0.0
+0.6
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.1
+0.6
+0.3
+0.2
+0.5
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