Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_20610 and PS417_20620 are separated by 1229 nucleotidesPS417_20620 and PS417_20625 overlap by 4 nucleotidesPS417_20625 and PS417_20630 are separated by 16 nucleotidesPS417_20630 and PS417_20635 are separated by 35 nucleotides PS417_20610: PS417_20610 - hypothetical protein, at 4,479,890 to 4,480,642 _20610 PS417_20620: PS417_20620 - glycosyl transferase family 2, at 4,481,872 to 4,482,870 _20620 PS417_20625: PS417_20625 - hypothetical protein, at 4,482,867 to 4,483,205 _20625 PS417_20630: PS417_20630 - adenylylsulfate kinase, at 4,483,222 to 4,483,815 _20630 PS417_20635: PS417_20635 - ABC transporter ATP-binding protein, at 4,483,851 to 4,485,215 _20635
Group Condition PS417_20610 PS417_20620 PS417_20625 PS417_20630 PS417_20635
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.4 +0.1 N.D. N.D. -5.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.4 -1.7 N.D. N.D. -2.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.3 +0.0 N.D. N.D. -4.7
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.4 -0.4 N.D. N.D. -5.0
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.3 -1.1 N.D. N.D. -2.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.1 -0.5 N.D. N.D. -5.0
stress Polymyxin B sulfate 0.006 mg/ml -3.6 +0.5 N.D. N.D. -4.3
soil soil sample 3; outgrowth in LB -3.1 +0.5 N.D. N.D. -4.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.0 -0.7 N.D. N.D. -3.3
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -4.5 -1.0 N.D. N.D. -1.5
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -1.4 N.D. N.D. -5.1
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.7 -0.7 N.D. N.D. -2.3
agar plate interaction control Taped volatile agar plate with no fungus -3.8 -1.2 N.D. N.D. -1.4
supernatant control Vogels_fungal_media 0.1X -0.7 -0.3 N.D. N.D. -5.1
carbon source L-Valine (C) -3.3 -0.4 N.D. N.D. -2.2
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.4 +0.2 N.D. N.D. -2.4
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -3.5 -0.6 N.D. N.D. -1.6
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -2.6 -0.7 N.D. N.D. -2.3
soil soil sample 7; outgrowth in LB -0.9 +0.5 N.D. N.D. -4.8
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.4 +0.4 N.D. N.D. -3.7
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -3.3 +0.5 N.D. N.D. -1.7
root root sample 6; outgrowth in LB +1.4 +0.9 N.D. N.D. -3.5
rhizosphere rhizosphere sample 2; outgrowth in LB +2.5 +2.0 N.D. N.D. -3.7
stress Gentamicin 0.008 mg/ml +0.4 +0.8 N.D. N.D. +4.3
phage P. simiae OR1 MOI 0.1 +1.2 +2.2 N.D. N.D. +2.2
stress Tetracycline 0.001 mg/ml +2.3 +1.4 N.D. N.D. +2.3
stress Neomycin 0.04 mg/ml +1.9 +1.4 N.D. N.D. +4.5
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.4 +0.6 N.D. N.D. +8.1
stress Doxycycline hyclate 0.001 mg/ml +2.7 +2.9 N.D. N.D. +3.5
phage Wcs_1 +2.7 +3.1 N.D. N.D. +3.4
remove
PS417_20610
plot		 remove
PS417_20620
plot		 remove
PS417_20625		 remove
PS417_20630
plot		 remove
PS417_20635
plot