Fitness for 5 genes in Pseudomonas simiae WCS417

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500 ntPS417_20600 and PS417_20605 are separated by 9 nucleotidesPS417_20605 and PS417_20610 are separated by 436 nucleotidesPS417_20610 and PS417_20620 are separated by 1229 nucleotidesPS417_20620 and PS417_20625 overlap by 4 nucleotides PS417_20600: PS417_20600 - hypothetical protein, at 4,476,835 to 4,478,007 _20600 PS417_20605: PS417_20605 - hypothetical protein, at 4,478,017 to 4,479,453 _20605 PS417_20610: PS417_20610 - hypothetical protein, at 4,479,890 to 4,480,642 _20610 PS417_20620: PS417_20620 - glycosyl transferase family 2, at 4,481,872 to 4,482,870 _20620 PS417_20625: PS417_20625 - hypothetical protein, at 4,482,867 to 4,483,205 _20625
Group Condition PS417_20600 PS417_20605 PS417_20610 PS417_20620 PS417_20625
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.1 -4.5 -1.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.3 -4.4 -1.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.1 -4.3 -1.1 N.D.
agar plate interaction control Taped volatile agar plate with no fungus +0.2 -0.2 -3.8 -1.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.2 -4.4 -0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.1 -0.1 -3.5 -0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 +0.1 -3.7 -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Valine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.1 -0.0 -2.9 -0.9 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.3 -0.1 -2.6 -0.7 N.D.
carbon source NAG (C) +0.1 -0.1 -3.1 -0.6 N.D.
motility outer cut, LB soft agar motility assay +0.3 +0.1 -3.9 -0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.6 +0.2 -4.4 +0.1 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 -0.0 -3.0 -0.7 N.D.
carbon source Gly-Glu (C) +0.4 +0.0 -2.3 -1.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.1 -3.4 +0.2 N.D.
stress Polymyxin B sulfate 0.006 mg/ml +0.2 -0.1 -3.6 +0.5 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.1 -0.3 -3.5 +0.9 N.D.
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.0 -3.3 +0.5 N.D.
carbon source L-Valine (C) +0.7 +0.1 -3.3 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.4 -3.3 +0.0 N.D.
soil soil sample 3; outgrowth in LB -0.1 +0.5 -3.1 +0.5 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml -0.2 +0.1 -2.3 +1.5 N.D.
stress Neomycin 0.04 mg/ml -0.2 -0.2 +1.9 +1.4 N.D.
stress methylglyoxal 0.032 vol% +0.3 -0.2 +2.6 +0.6 N.D.
stress Tetracycline 0.001 mg/ml -0.1 -0.2 +2.3 +1.4 N.D.
phage P. simiae OR1 MOI 0.1 +0.3 +0.2 +1.2 +2.2 N.D.
phage Wcs_0.1 +0.6 +0.6 +1.3 +1.9 N.D.
stress Doxycycline hyclate 0.001 mg/ml -0.1 -0.2 +2.7 +2.9 N.D.
rhizosphere rhizosphere sample 2; outgrowth in LB +0.6 +0.6 +2.5 +2.0 N.D.
phage Wcs_1 +0.7 +0.4 +2.7 +3.1 N.D.
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