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Fitness for 5 genes in
Pseudomonas simiae WCS417
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500 nt
PS417_20565 and PS417_20570 are separated by 17 nucleotides
PS417_20570 and PS417_20575 are separated by 351 nucleotides
PS417_20575 and PS417_20580 are separated by 70 nucleotides
PS417_20580 and PS417_20585 are separated by 390 nucleotides
PS417_20565: PS417_20565 - RNA polymerase subunit sigma-24, at 4,465,023 to 4,465,637
_20565
PS417_20570: PS417_20570 - 3-oxoacyl-ACP synthase, at 4,465,655 to 4,466,776
_20570
PS417_20575: PS417_20575 - ATP-dependent helicase HrpA, at 4,467,128 to 4,471,039
_20575
PS417_20580: PS417_20580 - isocitrate dehydrogenase, at 4,471,110 to 4,472,825
_20580
PS417_20585: PS417_20585 - chemotaxis protein, at 4,473,216 to 4,474,841
_20585
Group
Condition
PS417
_20565
PS417
_20570
PS417
_20575
PS417
_20580
PS417
_20585
phage
P. simiae ORA MOI 1
-0.2
-1.3
-0.4
-0.2
-4.5
phage
JP1 MOI 1
+0.1
-1.5
-0.4
+0.1
-4.5
phage
P. simiae Grant Run MOI 10
+0.1
-0.9
-0.9
-0.1
-4.1
phage
JP1 MOI 1
+0.3
-0.6
-0.4
+0.0
-5.0
phage
P. simiae OR Antrim MOI 0.1
-0.2
-0.9
-0.6
-0.2
-3.7
phage
JP1 MOI 10
+0.4
-2.2
-0.1
-0.2
-3.2
phage
P. simiae OR Antrim MOI 0.1
-0.1
-0.1
-0.9
-0.1
-4.1
phage
P. simiae Grant Run MOI 0.1
+0.3
-0.7
-0.6
-0.2
-3.9
phage
P. simiae OR Antrim MOI 10
-0.1
-0.5
-0.7
-0.1
-3.7
phage
P. simiae Grant Run MOI 10
+0.2
-1.2
-0.5
-0.1
-3.2
phage
P. simiae ORA MOI 10
+0.3
-0.6
-0.3
-0.1
-4.0
phage
P. simiae ORA MOI 0.1
+0.0
-0.7
-0.3
-0.1
-3.3
phage
P. simiae ORA MOI 0.1
-0.1
-0.7
-0.5
-0.0
-3.1
phage
JP1 MOI 10
-0.0
-0.7
-0.9
-0.2
-2.4
phage
P. simiae OR Antrim MOI 10
-0.0
-0.6
-0.4
-0.1
-3.0
phage
P. simiae OR Antrim MOI 1
-0.0
-0.7
-0.2
-0.1
-2.7
phage
JP1 MOI 0.1
+0.0
-0.4
-0.5
-0.1
-2.7
phage
P. simiae OR Antrim MOI 1
+0.2
+0.2
-0.7
-0.2
-3.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.1
-0.2
-0.2
-0.2
-3.1
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.2
-0.7
+0.1
-0.1
-2.8
phage
P. simiae Grant Run MOI 0.1
+0.1
-0.7
-0.3
-0.3
-2.0
carbon source
L-Valine (C)
-0.4
+0.1
-0.5
-2.3
-0.1
carbon source
L-Valine (C)
-0.4
-0.2
-0.3
-2.2
+0.2
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.2
-0.6
-0.0
-0.0
-2.5
stress
1-ethyl-3-methylimidazolium chloride 200 mM
+0.1
-0.6
-1.0
-0.2
-1.0
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.5
-1.0
+0.2
-0.2
-2.3
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.3
-0.3
-0.4
-0.2
-1.9
motility_chemotaxis
Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50
+0.4
-0.4
-0.6
-0.2
-1.6
stress
methylglyoxal 0.032 vol%
-0.2
-0.1
-2.2
+0.6
+0.3
stress
Doxycycline hyclate 0.001 mg/ml
-0.0
-0.7
+2.2
+0.1
-0.3
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