Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

Or view all 552 experiments or choose conditions or try the comparative fitness browser

Group	Condition	PS417_20520	PS417_20525	PS417_20530	PS417_20535	PS417_20540
carbon source	L-Valine (C)	-0.7	-0.1	-0.4	-0.3	-0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.6	-1.0	-0.0	-0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.8	+0.0	-0.2	+0.2	-0.4
stress	Cisplatin 0.01 mg/ml	-0.1	+0.1	-0.3	-1.3	-0.1
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.7	+0.4	-0.4	-0.2	-0.3
soil	soil sample 3; outgrowth in LB	-0.6	+0.4	-0.3	-0.2	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X	-0.3	+0.5	-0.2	-0.0	-1.2
carbon source	Xylitol (C)	-0.5	-0.2	-0.2	-0.9	+0.5
carbon source	Ethanol (C)	-0.7	+0.1	-0.1	-0.7	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.7	-0.8	+0.1	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.6	+0.5	-0.4	+0.2
agar plate interaction control	Parafilmed volatile agar plate with no fungus	-0.8	+0.1	+0.2	+0.4	-0.5
phage	P. simiae OR1 MOI 0.1	-0.4	+0.2	-0.0	+0.5	-0.8
soil	soil sample 2; outgrowth in LB	+0.3	-0.4	+0.2	+0.4	-0.8
agar plate interaction control	Taped volatile agar plate with no fungus	-0.8	-0.2	+0.2	+0.3	+0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.6	+0.1	+0.2	-0.3	-0.7
phage	JP1 MOI 1	+0.7	-0.5	+0.3	-0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.6	-0.3	+0.3	+0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.4	-0.5	+0.3	+0.4	-0.4
soil	soil sample 5; outgrowth in LB	-0.3	+0.6	+0.1	+0.4	-0.6
solid stress	Scopoletin 0.5 mM; solid stress	-0.6	+0.4	-0.2	-0.1	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.7	+0.3	-0.1	+0.5
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	+0.0	+0.3	-0.5	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.8	+0.3	-0.4	+0.3	-0.8
solid stress	Fraxetin 2 mM; solid stress	+1.7	-0.0	-0.1	-0.2	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.5	-0.2	+0.6	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	+0.5	+0.2	+0.5	-0.1
carbon source	Trisodium citrate (C)	+0.3	+0.8	+0.0	+0.3	+0.4
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.0	-0.9	+0.4	+0.2	+1.2
carbon source	L-Valine (C)	+0.8	+0.5	+0.4	-0.2	+0.5