Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_20515	PS417_20520	PS417_20525	PS417_20530	PS417_20535
rhizosphere	rhizosphere sample 1; outgrowth in LB	-0.9	-1.0	+0.0	-0.2	-0.2
carbon source	Xylitol (C)	-0.5	-0.5	-0.2	-0.2	-0.9
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.3	-1.8	+0.0	-0.2	+0.2
stress	Cisplatin 0.01 mg/ml	-0.0	-0.1	+0.1	-0.3	-1.3
supernatant control	Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB	-0.5	-0.7	+0.4	-0.4	-0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.2	-0.7	-0.8	+0.1	+0.2
root	root sample 6; outgrowth in LB	-0.4	-1.2	+0.1	+0.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.6	-1.0	-0.0	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.0	-0.5	-0.6	+0.5	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.3	+0.1	-0.4	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+0.5	-0.6	-0.3	+0.1	-0.5
carbon source	L-Valine (C)	+0.8	-0.7	-0.1	-0.4	-0.3
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	-0.7	-0.2	+0.3	-0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	+0.5	+0.0	+0.3	-0.5
phage	JP1 MOI 0.1	-0.7	+0.3	+0.3	-0.3	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	-0.2	+0.0	+0.5	+0.6
phage	JP1 MOI 1	+0.2	+0.7	-0.5	+0.3	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.1	+1.0	-0.9	+0.4	+0.2
phage	P. simiae OR1 MOI 0.1	+0.6	-0.4	+0.2	-0.0	+0.5
nitrogen source	Adenine (N)	+0.9	+0.7	-0.5	+0.1	+0.0
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	+0.5	-0.2	+0.6	+0.2	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.8	+0.5	-0.2	+0.6
solid stress	Fraxetin 2 mM; solid stress	+0.1	+1.7	-0.0	-0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.1	+0.7	+0.2	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.5	+0.5	+0.2	+0.5
carbon source	Trisodium citrate (C)	+0.4	+0.3	+0.8	+0.0	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.8	-0.2	+0.9	+0.1	+0.3
carbon source	L-Valine (C)	+0.5	+0.8	+0.5	+0.4	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+1.8	+0.3	-0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.5	+0.5	+0.5	+0.5	+0.1