Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_20495	PS417_20500	PS417_20505	PS417_20510	PS417_20515
carbon source	octanoate (C)	N.D.	-0.4	-0.5	-0.7	-0.6
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	N.D.	-0.3	-0.6	-0.2	-0.5
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	-0.3	-0.3	-0.3	-0.7
stress	1-ethyl-3-methylimidazolium chloride 200 mM	N.D.	+0.1	-0.7	-0.2	-0.8
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	N.D.	-0.7	-0.3	-0.3	-0.1
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	N.D.	-0.6	-0.2	-0.4	-0.1
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	N.D.	-0.2	-0.2	-0.2	-0.7
supernatant control	Vogels_fungal_media; pH 5.5	N.D.	-0.3	-0.6	-0.1	-0.2
supernatant control	Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB	N.D.	-0.3	-0.5	+0.1	-0.4
carbon source	2'-Deoxyinosine 5 mM (C)	N.D.	-0.4	+0.0	-0.2	-0.5
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	N.D.	-0.4	+0.2	-0.1	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.3	-0.4	+0.4	-1.1
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	N.D.	+0.4	-0.4	-0.0	-0.7
seeds	Growth on radish seeds for 72 hours	N.D.	-0.1	-0.8	+0.3	+0.0
seeds	Growth on radish seeds for 72 hours	N.D.	-0.3	+0.3	+0.1	-0.6
rhizosphere	rhizosphere sample 1; outgrowth in LB	N.D.	+0.5	+0.1	-0.2	-0.9
soil	soil sample 4; outgrowth in LB	N.D.	+0.2	-0.6	+0.2	-0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.4	-0.0	+0.1	-0.8
no stress control	TSB 0.5x with Dimethyl Sulfoxide 0.5 vol%; timepoint 1	N.D.	+0.5	-0.2	+0.0	-0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	N.D.	+0.6	-0.1	-0.0	-0.6
seeds	Growth on radish seeds for 72 hours	N.D.	+0.5	-0.3	+0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	N.D.	+0.5	-0.5	+0.2	-0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	N.D.	-0.0	-0.7	+0.2	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	N.D.	+0.2	-0.7	+0.2	+0.2
phage	P. simiae Grant Run MOI 0.1	N.D.	+0.3	-0.6	-0.1	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	N.D.	+0.0	-0.6	+0.2	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	N.D.	+0.2	+0.0	-0.3	+0.8
phage	P. simiae OR1 MOI 0.1	N.D.	+0.5	-0.2	-0.1	+0.6
phage	Wcs_1	N.D.	+0.9	-0.1	+0.3	+0.3
carbon source	L-Valine (C)	N.D.	+0.3	+0.0	+0.3	+0.8