Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_20485	PS417_20490	PS417_20495	PS417_20500	PS417_20505
seeds	Growth on radish seeds for 72 hours	-0.6	-0.1	N.D.	-0.1	-0.8
r2a control	R2A control	-0.7	-0.0	N.D.	-0.6	+0.1
soil	soil sample 4; outgrowth in LB	-0.7	-0.1	N.D.	+0.2	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Tryptophan; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.1	N.D.	-0.3	-0.3
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 1X	-0.2	+0.2	N.D.	-0.3	-0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.0	+0.2	N.D.	-0.2	-0.8
stress	methylglyoxal 0.032 vol%	-0.3	+0.2	N.D.	-0.5	-0.2
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x	+0.3	-0.3	N.D.	-0.0	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Threonine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.7	-0.2	N.D.	+0.1	+0.2
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, non-filtered; 0.5X; growth supplemented with 0.4X LB	+0.2	+0.2	N.D.	-0.7	-0.3
seeds	Growth on radish seeds for 72 hours	-0.8	+0.1	N.D.	+0.5	-0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	-1.3	+0.3	N.D.	+0.2	+0.3
carbon source	L-Valine (C)	-0.8	+0.1	N.D.	+0.3	+0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.5	+0.2	N.D.	+0.3	-0.4
phage	P. simiae OR Antrim MOI 10	-0.8	-0.1	N.D.	+0.6	-0.0
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.2	+0.1	N.D.	+0.2	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.3	N.D.	+0.3	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant	-0.1	+0.2	N.D.	-0.6	+0.5
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.4	+0.3	N.D.	+0.6	-0.1
soil	soil sample 6; outgrowth in LB	+0.3	+0.1	N.D.	+0.4	-0.4
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.3	N.D.	+0.5	-0.5
phage	P. simiae Grant Run MOI 0.1	+1.0	-0.2	N.D.	+0.3	-0.6
phage	P. simiae Grant Run MOI 0.1	+0.2	-0.0	N.D.	+0.7	-0.2
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.3	+0.2	N.D.	+0.3	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.8	+0.3	N.D.	-0.1	-0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	+1.4	+0.2	N.D.	+0.0	-0.6
phage	Wcs_1	+0.2	+0.1	N.D.	+0.9	-0.1
stress	LB_noSalt with Chloride 1100 mM	+0.7	+0.2	N.D.	+0.4	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.3	+0.1	N.D.	+0.8	+0.1
carbon source	L-Valine (C)	+1.0	+0.1	N.D.	+0.3	-0.1