Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02025	PS417_02030	PS417_02035	PS417_02040	PS417_02045
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.6	+0.1	-0.7	-0.4	-1.9
motility	inner cut, LB soft agar motility assay	+0.3	-0.6	-0.3	-0.9	-0.5
phage	JP1 MOI 1	+0.2	-0.7	+0.2	-0.4	-0.7
phage	P. simiae OR Antrim MOI 10	-0.0	-0.1	+0.5	-0.5	-1.4
phage	JP1 MOI 0.1	+0.3	+0.1	+0.1	-1.0	-1.0
soil	soil sample 5; outgrowth in LB	-0.5	-0.8	-0.2	+0.6	-0.5
phage	P. simiae OR Antrim MOI 10	+0.5	-0.2	-0.1	-0.5	-1.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-0.5	-0.7	-0.4	+0.7
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.6	+0.1	-1.1	-0.2	-0.2
stress	methylglyoxal 0.032 vol%	-0.1	+0.5	+0.6	-0.6	-1.3
seeds	Growth on radish seeds for 72 hours	+0.6	-0.9	+0.3	+0.3	-0.9
seeds	Growth on radish seeds for 72 hours	-0.3	-0.1	+0.8	+0.2	-1.1
phage	P. simiae Grant Run MOI 0.1	+0.5	-0.7	+0.3	+0.3	-0.8
agar plate interaction control	Taped volatile agar plate with no fungus	+0.4	+0.6	-0.4	+0.1	-1.3
root	root sample 6; outgrowth in LB	+0.1	+0.2	+0.6	-0.4	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.2	+0.0	+0.1	+0.8	-1.0
carbon source	L-Valine (C)	+0.4	-0.0	-1.1	+0.1	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.5	-0.3	-0.8	+0.3	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-0.0	-0.4	+0.1	+1.1	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	+0.4	-0.4	-0.5	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	+0.6	+0.7	+0.2	-0.9
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.2	+0.6	-1.1	+0.5	+0.9
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.5	-0.0	+0.3	+0.7	-0.6
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.3	+1.0	+0.4	+0.0	-0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.3	+0.3	-0.1	+0.9
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.3	-0.6	+0.9	+0.6	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.2	+1.3	+0.7	-0.4	-0.1
nitrogen source	Putrescine (N)	-0.3	+0.2	+0.3	+0.6	+0.6
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.7	+0.2	+0.3	-0.4	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.6	+0.5	+0.5	+0.0	+0.6