Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3984 and GFF3985 overlap by 11 nucleotidesGFF3985 and GFF3986 are separated by 4 nucleotidesGFF3986 and GFF3987 are separated by 53 nucleotidesGFF3987 and GFF3988 overlap by 4 nucleotides GFF3984 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 188,386 to 189,117 GFF3984 GFF3985 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 189,107 to 190,696 GFF3985 GFF3986 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 190,701 to 191,447 GFF3986 GFF3987 - 3-hydroxybutyrate dehydrogenase (EC 1.1.1.30), at 191,501 to 192,277 GFF3987 GFF3988 - Transcriptional regulator, MarR family, at 192,274 to 192,804 GFF3988
Group Condition GFF3984 GFF3985 GFF3986 GFF3987 GFF3988
complex community Community=arabino-guar; Passage=4 +0.2 +0.1 -4.1 -0.5 +0.2
complex community Community=guar; Passage=4 -0.9 -0.4 -2.0 +0.5 +0.0
complex community Community=Locust bean gum; Passage=4 -0.8 -0.2 -2.4 +0.3 +0.3
complex community Community=Locust bean gum; Passage=4 -0.3 -0.4 -2.0 -0.0 +0.3
complex community Community=arabino-guar; Passage=4 -1.9 -0.0 -0.0 +0.3 -0.6
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.3 +0.1 -0.6 -0.2 -0.3
complex community Community=arabino-guar; Passage=4 +0.3 +0.3 -1.4 -0.2 -0.4
phage phage_bap4 -0.1 -0.0 -1.1 -0.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.1 -0.0 -1.1 -0.0 -0.2
phage phage_bap4 +0.0 -0.3 -0.8 +0.0 -0.1
phage phage_bap4 +0.0 +0.0 -0.9 +0.1 -0.3
complex community Community=Kojac gum; Passage=4 +0.6 +0.2 -1.6 +0.0 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL +0.2 +0.1 -1.2 -0.0 -0.0
phage phage_bap4 -0.8 +0.3 +0.1 -0.0 -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 -0.1 -0.8 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 +0.1 -0.9 -0.3 +0.0
vitamin M9 with Supernatant from Cyptococcus +0.3 -0.2 -1.1 +0.2 +0.0
complex community Community=guar; Passage=4 -0.9 +0.0 +0.2 +0.1 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.4 +0.0 -0.4 +0.2 +0.1
complex community Community=Locust bean gum; Passage=4 -0.4 +0.2 -0.4 +0.3 -0.1
no phage control no phage control +0.2 -0.1 -0.7 +0.2 -0.1
complex community Community=Kojac gum; Passage=1 +0.4 -0.1 -1.0 +0.2 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.4 +0.1 -0.6 +0.1 -0.2
vitamin M9 with Supernatant from Cyptococcus +0.6 +0.2 -0.9 +0.3 -0.2
complex community Community=guar; Passage=4 -0.6 -0.4 +0.3 +0.5 +0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.6 +0.2 -0.1 -0.2 -0.3
phage phage_bap4 -0.4 +0.0 +0.7 +0.0 -0.1
complex community Community=Locust bean gum; Passage=4 -1.6 +0.2 +0.8 +0.5 +0.4
complex community Community=guar; Passage=4 +0.9 +0.4 -1.6 +0.5 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.4 -0.0 +0.5 +0.1 -0.3
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