Fitness for 5 genes in Variovorax sp. SCN45

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 61 experiments or choose conditions or try the comparative fitness browser

500 ntGFF3981 and GFF3982 are separated by 34 nucleotidesGFF3982 and GFF3983 overlap by 4 nucleotidesGFF3983 and GFF3984 overlap by 4 nucleotidesGFF3984 and GFF3985 overlap by 11 nucleotides GFF3981 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 184,352 to 185,515 GFF3981 GFF3982 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 185,550 to 186,605 GFF3982 GFF3983 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 186,602 to 188,389 GFF3983 GFF3984 - Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1), at 188,386 to 189,117 GFF3984 GFF3985 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 189,107 to 190,696 GFF3985
Group Condition GFF3981 GFF3982 GFF3983 GFF3984 GFF3985
complex community Community=guar; Passage=4 -0.7 -0.6 +0.1 -0.6 -0.4
complex community Community=guar; Passage=4 -0.1 -0.2 -0.5 -0.9 -0.4
complex community Community=Locust bean gum; Passage=4 -0.4 +0.4 -0.7 -1.6 +0.2
complex community Community=Locust bean gum; Passage=4 +0.2 -0.2 -0.7 -0.8 -0.2
complex community Community=guar; Passage=4 +0.1 -0.5 +0.3 -0.9 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL +0.1 -0.4 -0.3 -0.3 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 -0.3 -0.3 -0.4 -0.0
complex community Community=arabino-guar; Passage=4 -0.7 -0.9 +0.2 +0.3 +0.3
complex community Community=arabino-guar; Passage=4 +0.3 +1.0 -0.1 -1.9 -0.0
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 -0.2 +0.4 -0.5 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL -0.1 -0.9 +0.2 +0.1 -0.0
complex community Community=Locust bean gum; Passage=4 -0.3 -0.9 +0.8 -0.4 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 -0.4 +0.3 -0.6 +0.1
phage phage_bap4 +0.2 +0.1 +0.1 -0.8 +0.3
complex community Community=Kojac gum; Passage=1 -0.2 +0.1 -0.4 +0.4 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.3 -0.4 +0.4 +0.0 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.1 -0.2 +0.4 -0.4 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.1 -0.6 +0.2 +0.3 +0.0
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.3 +0.3 +0.1 +0.2
complex community Community=Kojac gum; Passage=4 -0.2 +0.2 -0.9 +0.6 +0.2
vitamin M9 with Supernatant from Cyptococcus -0.3 -0.6 +0.2 +0.6 +0.2
phage phage_bap4 +0.4 +0.3 -0.2 -0.3 +0.1
complex community Community=arabino-guar; Passage=4 +0.0 +0.4 -0.3 +0.2 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.3 +0.2 +0.4 +0.2
phage phage_bap4 +0.2 +0.3 -0.3 +0.3 +0.2
complex community Community=arabino-guar; Passage=4 +0.1 +0.4 +0.5 -0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 +0.0 +0.2 +0.6 +0.2
complex community Community=Locust bean gum; Passage=4 +0.4 +0.7 +1.0 -0.3 -0.4
vitamin M9 with Supernatant from Cyptococcus +0.5 -0.1 +0.4 +0.6 +0.1
complex community Community=guar; Passage=4 +0.0 +0.5 +0.0 +0.9 +0.4
remove
GFF3981
plot		 remove
GFF3982
plot		 remove
GFF3983		 remove
GFF3984
plot		 remove
GFF3985
plot