Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_20380	PS417_20385	PS417_20390	PS417_20395	PS417_20400
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.7	-0.3	-0.8	+0.0
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.5	+0.3	-0.1	-0.4	-0.1
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.1	-0.9	-0.0	-0.1	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.4	+0.2	+0.2	-0.5	-0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-0.5	-0.5	+0.2	-0.1	+0.3
phage	JP1 MOI 1	-0.3	-0.6	-0.3	+0.7	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-0.7	+0.4	-0.0	+0.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.6	-0.5	+0.0	-0.1	-0.0
phage	JP1 MOI 1	-0.1	-0.4	+0.2	+0.3	+0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	+0.4	+0.1	-0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.3	+0.6	+0.2	-0.2	+0.2
soil	soil sample 3; outgrowth in LB	+0.4	-0.2	+0.3	-0.5	+0.5
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	+0.6	-0.3	+0.3	-0.1	+0.0
phage	JP1 MOI 10	-0.3	-0.2	+0.2	+0.6	+0.4
supernatant	Supernatant; Trichoderma atroviride IMI grown in Vogels_fungal_media, filtered; 1X	+0.4	+0.2	-0.1	+0.5	-0.0
phage	P. simiae Grant Run MOI 10	-0.1	+0.4	+0.0	+0.5	+0.3
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.3	-0.1	+0.0	+0.5	+0.4
soil	soil sample 7; outgrowth in LB	+0.3	+0.4	+0.0	+0.2	+0.2
phage	P. simiae OR Antrim MOI 0.1	+0.4	+0.2	+0.2	+0.3	+0.1
motility	outer cut, LB soft agar motility assay	+0.1	+0.2	+0.2	+0.5	+0.2
stress	Gentamicin 0.008 mg/ml	+0.4	+0.3	-0.1	+0.4	+0.3
rhizosphere	rhizosphere sample 2; outgrowth in LB	+0.4	+0.1	+0.4	+0.2	+0.2
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days	+0.1	+0.4	+0.1	+0.4	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	-0.1	+0.2	+0.6	+0.2
in planta	Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	+0.2	+0.6	+0.2	+0.5	-0.0
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.8	+0.7	+0.1	-0.2	+0.1
stress	LB_noSalt with Chloride 1100 mM	+0.3	+0.2	+0.4	+0.3	+0.4
phage	P. simiae ORA MOI 0.1	+0.6	+0.6	+0.2	+0.3	+0.3
seeds	Growth on radish seeds for 72 hours	+0.3	+0.1	+0.1	+1.1	+0.3
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.3	+0.0	+0.9	+0.3