Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_02015	PS417_02020	PS417_02025	PS417_02030	PS417_02035
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.1	-0.8	+0.2	-0.2	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.1	-1.4	+0.2	-0.4	+0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-0.0	-0.8	+0.5	-0.3	-0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Cysteine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	+0.1	-0.3	+0.1	-0.5	-0.7
carbon source	L-Valine (C)	-0.1	-0.2	+0.4	-0.0	-1.1
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-1.0	-0.3	+0.3	-0.3
stress	R2A with Polymyxin B sulfate 0.002 mg/ml	+0.0	-0.4	+0.6	+0.1	-1.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.2	+0.1	-0.2	+0.6	-1.1
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.5	-0.5	+0.3	-0.0	-0.6
seeds	Growth on radish seeds for 72 hours	-0.1	-0.2	+0.6	-0.9	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.3	+0.6	+0.1	-0.7
supernatant control	Vogels_fungal_media 0.1X	+0.0	-0.5	-0.4	+0.1	+0.8
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	+0.3	-0.6	+0.7	+0.2	-0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant	-0.1	-0.6	+0.8	+0.1	+0.2
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+0.4	-0.7	+0.2	+0.0	+0.8
soil	soil sample 8; outgrowth in LB	-0.2	+0.6	-0.5	+0.2	+0.6
agar plate interaction control	Taped volatile agar plate with no fungus	-0.2	+0.3	+0.4	+0.6	-0.4
agar plate interaction control	Parafilmed volatile agar plate with no fungus	+0.1	+1.4	+0.2	-0.1	-0.7
phage	JP1 MOI 10	-0.0	+0.9	+0.0	-0.5	+0.5
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.0	-0.9	-0.2	+1.3	+0.7
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.4	+0.4	+0.4	-0.5	+0.2
rhizosphere	rhizosphere sample 8; outgrowth in LB	+0.3	+0.1	+0.3	-0.6	+0.9
seeds	Growth on radish seeds for 72 hours	+0.3	+0.7	-0.3	-0.1	+0.8
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	+0.3	+0.4	-0.3	+0.2	+0.8
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+0.3	-0.2	+0.1	+0.6	+0.7
seeds	Growth on radish seeds for 72 hours	+1.0	+0.2	+0.4	-0.3	+0.4
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	+0.2	-0.1	+0.3	+1.0	+0.4
stress	methylglyoxal 0.032 vol%	+0.2	+0.5	-0.1	+0.5	+0.6
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days	+0.1	+0.2	+0.6	+0.5	+0.5
root	root sample 6; outgrowth in LB	+0.5	+0.7	+0.1	+0.2	+0.6