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Protein
Homologs
Fitness for 5 genes in
Variovorax sp. SCN45
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
GFF3977 and GFF3978 are separated by 1 nucleotides
GFF3978 and GFF3979 are separated by 28 nucleotides
GFF3979 and GFF3980 overlap by 4 nucleotides
GFF3980 and GFF3981 are separated by 43 nucleotides
GFF3977 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 180,180 to 181,346
GFF3977
GFF3978 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 181,348 to 182,493
GFF3978
GFF3979 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 182,522 to 183,847
GFF3979
GFF3980 - 3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-), at 183,844 to 184,308
GFF3980
GFF3981 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 184,352 to 185,515
GFF3981
Group
Condition
GFF3977
GFF3978
GFF3979
GFF3980
GFF3981
complex community
Community=guar; Passage=4
-0.4
-0.3
+0.2
-0.9
+0.1
complex community
Community=guar; Passage=4
+0.2
-1.4
-0.5
+1.3
-0.7
phage
phage_bap4
-0.1
+0.1
-0.1
-1.1
+0.1
phage
phage_bap4
+0.2
-0.1
+0.0
-1.1
-0.0
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.2
-0.3
+0.0
-0.4
complex community
Community=Kojac gum; Passage=1
-0.3
+0.1
+0.1
-0.5
-0.2
complex community
Community=arabino-guar; Passage=4
+0.3
-0.1
-0.2
-1.1
+0.3
vitamin
M9 with calcium pantothenate 10 mg/mL
+0.3
+0.0
+0.1
-0.8
-0.3
no phage control
no phage control
+0.2
+0.1
+0.2
-1.4
+0.3
vitamin
M9 with Supernatant from Cyptococcus
-0.5
+0.1
+0.3
+0.1
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
-0.3
-0.0
+0.7
+0.0
vitamin
M9 with Supernatant from Cyptococcus
+0.2
-0.1
+0.4
-0.3
+0.1
vitamin
M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL
+0.0
+0.2
+0.4
-0.3
-0.1
complex community
Community=arabino-guar; Passage=4
+0.2
-0.1
-0.2
+0.7
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.0
-0.0
+0.0
+0.9
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
-0.2
+0.1
+0.2
+0.7
-0.1
complex community
Community=Locust bean gum; Passage=4
+0.1
-0.6
-0.1
+1.6
-0.3
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
-0.2
+0.2
+0.0
+0.9
-0.1
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL
+0.2
+0.1
-0.1
+0.6
+0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.1
-0.1
+0.2
+0.7
+0.0
vitamin
M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL
-0.1
+0.1
+0.2
+0.8
+0.0
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL
+0.3
+0.1
+0.3
+0.4
+0.0
complex community
Community=Kojac gum; Passage=4
+0.3
-0.1
+0.3
+0.7
-0.2
phage
phage_bap4
+0.1
+0.1
+0.2
+0.6
+0.2
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.2
-0.3
+0.5
+0.7
+0.2
complex community
Community=arabino-guar; Passage=4
+0.4
+0.4
-0.6
+2.1
-0.7
vitamin
M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL
+0.3
-0.3
+0.1
+1.6
-0.1
vitamin
M9 with Supernatant from Cyptococcus
+0.3
+0.2
+0.5
+0.4
+0.5
complex community
Community=Locust bean gum; Passage=4
+0.4
+0.2
-0.1
+1.2
+0.2
complex community
Community=Locust bean gum; Passage=4
-0.0
+0.1
+0.6
+1.4
+0.4
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