Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3977 and GFF3978 are separated by 1 nucleotidesGFF3978 and GFF3979 are separated by 28 nucleotidesGFF3979 and GFF3980 overlap by 4 nucleotidesGFF3980 and GFF3981 are separated by 43 nucleotides GFF3977 - ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate), at 180,180 to 181,346 GFF3977 GFF3978 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 181,348 to 182,493 GFF3978 GFF3979 - 3-phenylpropionate dioxygenase alpha subunit (EC 1.14.1.-), at 182,522 to 183,847 GFF3979 GFF3980 - 3-phenylpropionate dioxygenase beta subunit (EC 1.14.1.-), at 183,844 to 184,308 GFF3980 GFF3981 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 184,352 to 185,515 GFF3981
Group Condition GFF3977 GFF3978 GFF3979 GFF3980 GFF3981
complex community Community=guar; Passage=4 -0.4 -0.3 +0.2 -0.9 +0.1
complex community Community=guar; Passage=4 +0.2 -1.4 -0.5 +1.3 -0.7
phage phage_bap4 -0.1 +0.1 -0.1 -1.1 +0.1
phage phage_bap4 +0.2 -0.1 +0.0 -1.1 -0.0
complex community Community=Locust bean gum; Passage=4 +0.1 -0.2 -0.3 +0.0 -0.4
complex community Community=Kojac gum; Passage=1 -0.3 +0.1 +0.1 -0.5 -0.2
complex community Community=arabino-guar; Passage=4 +0.3 -0.1 -0.2 -1.1 +0.3
vitamin M9 with calcium pantothenate 10 mg/mL +0.3 +0.0 +0.1 -0.8 -0.3
no phage control no phage control +0.2 +0.1 +0.2 -1.4 +0.3
vitamin M9 with Supernatant from Cyptococcus -0.5 +0.1 +0.3 +0.1 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 -0.3 -0.0 +0.7 +0.0
vitamin M9 with Supernatant from Cyptococcus +0.2 -0.1 +0.4 -0.3 +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.0 +0.2 +0.4 -0.3 -0.1
complex community Community=arabino-guar; Passage=4 +0.2 -0.1 -0.2 +0.7 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.0 -0.0 +0.0 +0.9 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 +0.1 +0.2 +0.7 -0.1
complex community Community=Locust bean gum; Passage=4 +0.1 -0.6 -0.1 +1.6 -0.3
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL -0.2 +0.2 +0.0 +0.9 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL +0.2 +0.1 -0.1 +0.6 +0.1
vitamin M9 with Supernatant from Cyptococcus +0.1 -0.1 +0.2 +0.7 +0.0
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 +0.1 +0.2 +0.8 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.3 +0.1 +0.3 +0.4 +0.0
complex community Community=Kojac gum; Passage=4 +0.3 -0.1 +0.3 +0.7 -0.2
phage phage_bap4 +0.1 +0.1 +0.2 +0.6 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.2 -0.3 +0.5 +0.7 +0.2
complex community Community=arabino-guar; Passage=4 +0.4 +0.4 -0.6 +2.1 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 -0.3 +0.1 +1.6 -0.1
vitamin M9 with Supernatant from Cyptococcus +0.3 +0.2 +0.5 +0.4 +0.5
complex community Community=Locust bean gum; Passage=4 +0.4 +0.2 -0.1 +1.2 +0.2
complex community Community=Locust bean gum; Passage=4 -0.0 +0.1 +0.6 +1.4 +0.4
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