Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3971 and GFF3972 are separated by 14 nucleotidesGFF3972 and GFF3973 overlap by 4 nucleotidesGFF3973 and GFF3974 overlap by 4 nucleotidesGFF3974 and GFF3975 are separated by 16 nucleotides GFF3971 - Aromatic-ring-hydroxylating dioxygenase, beta subunit (EC 1.14.12.3), at 174,014 to 174,505 GFF3971 GFF3972 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 174,520 to 176,148 GFF3972 GFF3973 - FIG01198345: hypothetical protein, at 176,145 to 177,320 GFF3973 GFF3974 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 177,317 to 178,570 GFF3974 GFF3975 - Metal-dependent hydrolase, at 178,587 to 179,399 GFF3975
Group Condition GFF3971 GFF3972 GFF3973 GFF3974 GFF3975
complex community Community=arabino-guar; Passage=4 N.D. -0.5 -0.4 -4.6 -1.5
complex community Community=guar; Passage=4 N.D. -0.5 -0.9 -2.4 -2.3
complex community Community=arabino-guar; Passage=4 N.D. -0.4 -0.7 -3.5 -0.9
complex community Community=guar; Passage=4 N.D. +0.3 -0.8 -3.8 -0.8
complex community Community=guar; Passage=4 N.D. -0.3 -1.1 -1.5 -1.1
complex community Community=Locust bean gum; Passage=4 N.D. +0.2 +0.6 -2.4 -1.2
complex community Community=Locust bean gum; Passage=4 N.D. +0.3 -0.3 -2.8 +0.1
complex community Community=guar; Passage=4 N.D. +0.2 -0.4 -0.6 -1.8
complex community Community=Locust bean gum; Passage=4 N.D. +0.6 -0.5 -2.0 -0.6
phage phage_bap4 N.D. -0.1 -0.3 -1.4 +0.1
complex community Community=arabino-guar; Passage=4 N.D. +0.3 +0.0 -1.2 -0.6
no phage control no phage control N.D. -0.0 -0.2 -1.0 -0.1
vitamin M9 with calcium pantothenate 10 mg/mL N.D. -0.1 -0.6 -0.6 -0.1
complex community Community=Locust bean gum; Passage=4 N.D. -0.1 +0.1 +0.1 -1.5
complex community Community=Kojac gum; Passage=1 N.D. -0.0 -0.1 -0.9 -0.3
complex community Community=Locust bean gum; Passage=1 N.D. +0.1 -0.5 -0.0 -0.7
complex community Community=arabino-guar; Passage=4 N.D. +0.7 -0.4 +0.1 -1.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL N.D. +0.3 -0.1 -0.9 -0.2
phage phage_bap4 N.D. +0.3 -0.2 -0.4 -0.4
vitamin M9 with Supernatant from Cyptococcus N.D. -0.3 +0.1 -0.5 +0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. +0.2 -0.0 -0.8 -0.0
vitamin M9 with Supernatant from Cyptococcus N.D. +0.2 +0.3 -0.4 -0.7
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. +0.2 -0.2 -0.5 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. +0.3 -0.4 +0.1 -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 2 mg/mL N.D. +0.3 +0.1 -0.3 -0.3
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL N.D. +0.5 +0.1 -0.7 +0.0
vitamin M9 with Supernatant from Cyptococcus N.D. +0.4 +0.1 -0.5 +0.1
complex community Community=Kojac gum; Passage=4 N.D. +0.2 -0.3 +0.7 -0.3
phage phage_bap4 N.D. -0.2 +0.5 +0.3 +0.2
phage phage_bap4 N.D. -0.4 +0.5 +0.8 +0.5
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