Fitness for 5 genes in Pseudomonas simiae WCS417

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	PS417_20340	PS417_20345	PS417_20350	PS417_20355	PS417_20360
agar plate interaction control	Taped volatile agar plate with no fungus	-0.8	-0.5	-0.4	+0.1	-0.2
agar plate interaction	Parafilmed volatile agar plate with Trichoderma atroviridae IMI	-1.5	+0.1	-0.2	+0.3	-0.4
supernatant control:fungal media	R2A with Vogels_fungal_media 0.8X	-1.5	-0.3	+0.1	+0.1	-0.0
phage	JP1 MOI 0.1	-1.8	+0.3	-0.1	+0.0	-0.1
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-2.1	+0.0	+0.1	-0.0	+0.3
in planta	Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days	-0.2	-0.7	-0.4	+0.2	-0.5
supernatant	Supernatant; Trichoderma virens RS grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.25x	-1.3	+0.2	-0.3	-0.1	+0.2
phage	P. simiae ORA MOI 0.1	-1.8	+0.2	+0.3	+0.1	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Isoleucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.4	+0.1	+0.0	-0.2	+0.4
phage	P. simiae Grant Run MOI 0.1	-1.3	+0.2	-0.2	+0.1	+0.1
phage	JP1 MOI 10	-1.5	+0.3	+0.2	+0.1	+0.0
soil	soil sample 7; outgrowth in LB	-0.5	-0.0	+0.7	-0.9	-0.1
phage	P. simiae Grant Run MOI 0.1	-0.8	+0.2	+0.4	-0.5	-0.2
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Lysine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	-1.0	-0.2	-0.0	-0.3	+0.7
stress	R2A with Polymyxin B sulfate 0.003 mg/ml	-0.7	-0.3	-0.1	+0.7	-0.4
seeds	Growth on radish seeds for 72 hours	-1.4	+0.5	-0.2	+0.5	-0.1
carbon source	L-Valine (C)	-1.1	+0.5	-0.1	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.0	+0.6	+0.1	+0.4	-0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	-1.3	-0.0	+0.3	+0.4	+0.3
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Glutamic; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50	-0.9	+0.4	+0.2	+0.1	+0.3
phage	P. simiae OR Antrim MOI 1	-1.0	+0.1	+0.2	+0.6	+0.2
soil	soil sample 5; outgrowth in LB	+0.9	-0.3	+0.5	-0.2	-0.2
soil	soil sample 2; outgrowth in LB	+0.5	+0.2	+0.6	-0.6	+0.2
rhizosphere	rhizosphere sample 2; outgrowth in LB	-0.6	-0.2	+0.5	+0.5	+0.7
motility_chemotaxis	Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50	+1.2	+0.2	+0.4	-0.1	-0.1
motility	outer cut, LB soft agar motility assay	+1.3	+0.4	+0.3	+0.1	-0.3
r2a control with 0.2x vogels	R2A control with 0.2X Vogels	+0.7	+0.3	+0.2	+0.2	+0.4
in planta	Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days	+1.1	-0.2	-0.0	+1.0	+0.0
motility	outer cut, LB soft agar motility assay	+0.6	+0.6	+0.2	+0.4	+0.4
seeds	Growth on radish seeds for 72 hours	+0.9	+0.2	+0.5	+0.2	+0.3