Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3963 and GFF3964 overlap by 4 nucleotidesGFF3964 and GFF3965 overlap by 4 nucleotidesGFF3965 and GFF3966 are separated by 41 nucleotidesGFF3966 and GFF3967 are separated by 144 nucleotides GFF3963 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 164,624 to 165,628 GFF3963 GFF3964 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 165,625 to 166,428 GFF3964 GFF3965 - Alcohol dehydrogenase, zinc-binding, at 166,425 to 167,309 GFF3965 GFF3966 - Homoprotocatechuate degradative operon repressor, at 167,351 to 167,827 GFF3966 GFF3967 - Indolepyruvate oxidoreductase subunit IorA (EC 1.2.7.8), at 167,972 to 170,164 GFF3967
Group Condition GFF3963 GFF3964 GFF3965 GFF3966 GFF3967
complex community Community=Locust bean gum; Passage=4 -1.8 -0.2 +0.1 N.D. +0.3
complex community Community=arabino-guar; Passage=4 -0.9 -0.2 +0.0 N.D. -0.5
complex community Community=guar; Passage=4 +0.0 -0.1 -0.5 N.D. -0.5
complex community Community=Locust bean gum; Passage=4 -1.7 +0.6 -0.2 N.D. +0.4
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.1 -0.5 -0.3 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.8 +0.1 -0.1 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.0 -0.6 +0.1 N.D. -0.1
complex community Community=arabino-guar; Passage=4 -0.8 +0.2 +0.6 N.D. -0.4
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.5 +0.1 -0.2 N.D. +0.2
complex community Community=guar; Passage=4 -0.5 +0.6 -0.4 N.D. -0.1
complex community Community=Kojac gum; Passage=1 -0.4 -0.0 +0.3 N.D. -0.1
complex community Community=guar; Passage=4 -0.6 +0.2 +0.6 N.D. -0.4
vitamin M9 with Supernatant from Cyptococcus +0.3 -0.3 -0.2 N.D. +0.0
complex community Community=Kojac gum; Passage=4 -0.8 +0.1 -0.0 N.D. +0.5
complex community Community=arabino-guar; Passage=4 +0.1 +0.1 -0.6 N.D. +0.2
no phage control no phage control +0.1 -0.4 +0.1 N.D. +0.0
phage phage_bap4 +0.2 -0.3 +0.2 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL +0.4 -0.4 +0.1 N.D. -0.1
complex community Community=guar; Passage=4 +0.4 +0.2 -0.5 N.D. +0.0
no phage control no phage control -0.4 +0.2 +0.2 N.D. +0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.3 -0.3 +0.2 N.D. -0.0
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.5 -0.1 +0.0 N.D. -0.1
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.5 -0.1 +0.2 N.D. -0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 10 mg/mL +0.4 -0.2 +0.2 N.D. +0.1
complex community Community=Locust bean gum; Passage=4 +0.2 -0.4 +0.6 N.D. +0.1
vitamin M9 with Supernatant from Cyptococcus +0.2 +0.3 -0.0 N.D. +0.2
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL +0.6 +0.0 +0.0 N.D. +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL +0.6 +0.2 +0.1 N.D. -0.0
complex community Community=arabino-guar; Passage=4 +0.1 -0.6 +0.3 N.D. +1.1
complex community Community=Locust bean gum; Passage=4 -0.7 +1.2 +0.1 N.D. +0.3
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