Fitness for 5 genes in Variovorax sp. SCN45

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500 ntGFF3960 and GFF3961 are separated by 248 nucleotidesGFF3961 and GFF3962 are separated by 213 nucleotidesGFF3962 and GFF3963 overlap by 11 nucleotidesGFF3963 and GFF3964 overlap by 4 nucleotides GFF3960 - 3'-to-5' oligoribonuclease (orn), at 160,619 to 161,215 GFF3960 GFF3961 - ATP-dependent RNA helicase NGO0650, at 161,464 to 163,347 GFF3961 GFF3962 - Opine dehydrogenase (EC 1.5.1.28), at 163,561 to 164,634 GFF3962 GFF3963 - 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), at 164,624 to 165,628 GFF3963 GFF3964 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 165,625 to 166,428 GFF3964
Group Condition GFF3960 GFF3961 GFF3962 GFF3963 GFF3964
complex community Community=arabino-guar; Passage=4 -3.1 -0.2 +0.3 -0.8 +0.2
complex community Community=Locust bean gum; Passage=4 -1.6 -0.2 +0.4 -1.8 -0.2
complex community Community=Kojac gum; Passage=4 -2.5 +0.3 -0.2 -0.8 +0.1
complex community Community=arabino-guar; Passage=4 -1.5 -0.2 -0.1 -0.9 -0.2
complex community Community=guar; Passage=4 -2.7 +0.3 -0.0 +0.0 -0.1
complex community Community=arabino-guar; Passage=4 -1.9 -0.1 +0.3 +0.1 -0.6
complex community Community=guar; Passage=4 -3.1 +0.1 +0.3 +0.4 +0.2
complex community Community=guar; Passage=4 -1.5 -0.5 +0.5 -0.6 +0.2
no phage control no phage control -1.7 +0.0 +0.1 +0.1 -0.4
complex community Community=Locust bean gum; Passage=4 -1.4 +0.5 +0.3 -1.7 +0.6
no phage control no phage control -1.4 -0.1 -0.0 -0.4 +0.2
no phage control no phage control -1.8 +0.1 +0.2 -0.0 -0.0
phage phage_bap4 -1.2 +0.1 +0.0 -0.4 -0.0
phage phage_bap4 -1.7 -0.0 +0.2 +0.1 -0.0
phage phage_bap4 -1.5 +0.1 +0.2 -0.1 -0.1
vitamin M9 with Supernatant from Cyptococcus and thiamine HCl 10 mg/mL -0.6 -0.2 +0.1 -0.8 +0.1
phage phage_bap4 -1.2 -0.0 +0.1 +0.2 -0.3
no phage control no phage control -1.6 +0.3 +0.2 -0.1 +0.0
phage phage_bap4 -1.3 -0.0 +0.1 +0.0 +0.2
complex community Community=Locust bean gum; Passage=4 -1.3 +0.3 +0.3 +0.2 -0.4
complex community Community=guar; Passage=4 -1.4 +0.4 +0.2 -0.5 +0.6
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.5 -0.1 +0.3 -0.4 +0.1
vitamin M9 with calcium pantothenate 10 mg/mL -0.6 -0.1 +0.2 +0.4 -0.4
phage phage_bap4 -1.0 +0.3 +0.0 +0.1 -0.0
complex community Community=arabino-guar; Passage=4 -1.5 +0.4 +0.4 +0.1 +0.1
vitamin M9 with Supernatant from Cyptococcus and calcium pantothenate 10 mg/mL -0.5 -0.5 +0.1 +0.2 +0.1
phage phage_bap4 -1.2 +0.2 -0.0 +0.4 +0.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.2 +0.4 +0.1 -0.5 +0.1
complex community Community=Locust bean gum; Passage=4 -1.2 +0.2 +0.7 -0.7 +1.2
vitamin M9 with calcium pantothenate 10 mg/mL and thiamine HCl 50 mg/mL -0.4 +0.1 +0.2 +0.5 -0.1
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