Fitness for 5 genes in Pseudomonas simiae WCS417

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 554 experiments or choose conditions or try the comparative fitness browser

500 ntPS417_20210 and PS417_20215 overlap by 89 nucleotidesPS417_20215 and PS417_20220 are separated by 198 nucleotidesPS417_20220 and PS417_20225 are separated by 128 nucleotidesPS417_20225 and PS417_20230 are separated by 313 nucleotides PS417_20210: PS417_20210 - membrane protein, at 4,390,658 to 4,391,866 _20210 PS417_20215: PS417_20215 - nitrate reductase, at 4,391,778 to 4,393,220 _20215 PS417_20220: PS417_20220 - membrane protein, at 4,393,419 to 4,393,817 _20220 PS417_20225: PS417_20225 - GntR family transcriptional regulator, at 4,393,946 to 4,394,782 _20225 PS417_20230: PS417_20230 - hypothetical protein, at 4,395,096 to 4,395,284 _20230
Group Condition PS417_20210 PS417_20215 PS417_20220 PS417_20225 PS417_20230
seeds Growth on radish seeds for 72 hours -0.3 +0.1 +0.0 -1.1 N.D.
stress R2A with Polymyxin B sulfate 0.002 mg/ml -0.1 -0.2 +0.1 -1.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 +0.2 -0.0 -0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.5 -0.0 +0.2 -0.3 N.D.
phage JP1 MOI 10 -0.3 +0.2 -0.4 +0.1 N.D.
phage JP1 MOI 1 -0.2 -0.3 -0.2 +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.1 +0.4 -0.2 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Histidine; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.2 +0.2 +0.3 -0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Serine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.4 +0.3 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days -0.0 +0.0 +0.8 -0.4 N.D.
stress R2A with Polymyxin B sulfate 0.003 mg/ml +0.8 -0.2 -0.1 -0.1 N.D.
stress Gentamicin 0.008 mg/ml +0.3 -0.2 +0.4 -0.1 N.D.
phage Wcs_1 -0.2 +0.1 +0.2 +0.5 N.D.
carbon source L-Valine (C) -0.1 -0.1 -0.1 +1.0 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 -0.2 +0.2 +0.0 +0.8 N.D.
motility inner cut, LB soft agar motility assay -0.3 +0.3 -0.0 +0.8 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Arginine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.3 +0.3 +0.5 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 -0.0 +0.2 +0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=casaminos; Chemical_conc=5mM; Distance=2cm; Sample=inner; Collection=outgrowth_in_LBkan50 +0.3 +0.4 +0.0 +0.3 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Asparagine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +0.3 +0.4 -0.2 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 +0.1 +0.2 +0.6 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=Glycine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 -0.1 +0.2 +0.7 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Alanine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.2 +0.1 +0.5 +0.2 N.D.
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.4 +0.0 +0.2 +0.5 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Proline; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.0 +0.3 +0.5 +0.4 N.D.
motility_chemotaxis Chemotaxis:Motility:: Method=Plug_approach; Chemical=L-Leucine; Chemical_conc=5mM; Distance=2cm; Sample=outer; Collection=outgrowth_in_LBkan50 +0.4 +0.2 +0.1 +0.5 N.D.
stress methylglyoxal 0.032 vol% -0.1 +0.1 +0.3 +1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.0 +0.1 +0.2 +1.0 N.D.
motility inner cut, LB soft agar motility assay +0.3 +0.0 +0.5 +0.7 N.D.
root root sample 6; outgrowth in LB +0.5 +0.5 +0.2 +0.5 N.D.
remove
PS417_20210
plot		 remove
PS417_20215
plot		 remove
PS417_20220		 remove
PS417_20225
plot		 remove
PS417_20230
plot