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Cofit
Protein
Homologs
Fitness for 5 genes in
Sphingobium sp. HT1-2
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Top 18 experiments (either direction), sorted by average fitness
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500 nt
GFF3946 and GFF3947 are separated by 9 nucleotides
GFF3947 and GFF3948 are separated by 254 nucleotides
GFF3948 and GFF3949 are separated by 47 nucleotides
GFF3949 and GFF3950 are separated by 116 nucleotides
GFF3946 - Peptidase, M16 family, at 3,983,477 to 3,986,374
GFF3946
GFF3947 - hypothetical protein, at 3,986,384 to 3,986,554
GFF3947
GFF3948 - Xaa-Pro dipeptidase (EC 3.4.13.9), at 3,986,809 to 3,988,062
GFF3948
GFF3949 - Transcriptional regulator, AcrR family, at 3,988,110 to 3,988,697
GFF3949
GFF3950 - RND efflux system, membrane fusion protein, at 3,988,814 to 3,990,004
GFF3950
Group
Condition
GFF3946
GFF3947
GFF3948
GFF3949
GFF3950
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.3
-0.6
+0.0
-1.1
-0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.6
-0.4
-0.0
+0.4
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.4
+0.3
+0.0
-1.2
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.4
+0.5
+0.1
-1.1
-0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
-0.2
-0.1
-0.0
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.1
+0.1
-0.0
-0.4
+0.3
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
-0.0
-0.2
-0.2
+0.3
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.5
-0.2
+0.1
-0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
+0.0
+0.1
+0.2
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.5
+0.1
+0.1
-0.2
+0.0
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.0
+0.0
+0.1
+0.3
+0.0
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
-0.1
+0.0
+0.2
+0.5
-0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.4
+0.1
+0.1
-0.1
+0.2
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.1
+0.2
-0.1
+0.4
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.3
+0.1
-0.0
+0.2
+0.2
carbon and nitrogen source
EMM_noCarbon with Sucrose and Putrescine
+0.4
+0.4
-0.1
-0.1
+0.1
carbon and nitrogen source
EMM_noCarbon with Sucrose and Ammonium Sulfate
+0.2
+0.2
-0.0
+0.6
+0.1
carbon and nitrogen source
EMM_noCarbon with D-Glucose and Ammonium Sulfate
+0.2
+0.5
+0.0
+0.5
+0.2
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